RNAseq workshop July 10-11, 2017

These are tutorials for the RNAseq workshop at SIO in Oct, 2017.

They are under Creative Commons 0 license, free for all to use, reuse, and remix.

Instructors (alphabetical):

Admin + organization magicians:

Name		Name	Last commit message	Last commit date
Latest commit History 187 Commits
_static		_static
_templates		_templates
for-instructors		for-instructors
jetstream		jetstream
jupyter-notebook-demo		jupyter-notebook-demo
.DS_Store		.DS_Store
.gitignore		.gitignore
DE.md		DE.md
LC-github.md		LC-github.md
Makefile		Makefile
README.md		README.md
analyzing_nanopore_data.md		analyzing_nanopore_data.md
assembly-trinity.md		assembly-trinity.md
clusters_tSNE_example.Rmd		clusters_tSNE_example.Rmd
clusters_tSNE_example.html		clusters_tSNE_example.html
code-of-conduct.rst		code-of-conduct.rst
command-line-and-rstudio.md		command-line-and-rstudio.md
conf.py		conf.py
counting.md		counting.md
dammit_annotation.md		dammit_annotation.md
database_resources.md		database_resources.md
deseq2-asthma.md		deseq2-asthma.md
evaluation.md		evaluation.md
filezila-file-transfer.md		filezila-file-transfer.md
git_commands.md		git_commands.md
github.md		github.md
index.md		index.md
introduction-to-automation.md		introduction-to-automation.md
kmers-and-sourmash.md		kmers-and-sourmash.md
nema_gene_name_id.csv		nema_gene_name_id.csv
pathway_analysis.md		pathway_analysis.md
plotPCAWithSampleNames.R		plotPCAWithSampleNames.R
quality-trimming.md		quality-trimming.md
quantification.md		quantification.md
requirements.txt		requirements.txt
rmarkdown_rnaseq.md		rmarkdown_rnaseq.md
toc.rst		toc.rst
variant-calling.md		variant-calling.md

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