Top level organization of unified Perturbed Equilibrium code#119

Merged

logan-nc merged 69 commits intodevelopfrom

perturbed_equilibrium

Feb 13, 2026

Commits on Dec 30, 2025

JPEC - REFACTOR - Moved main function from to JPEC

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PERTURBEDEQUILIBRIUM - NEW FEATURE - Add skeleton module for perturbed equilibrium calculations

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PERTURBEDEQUILIBRIUM - TEST - Add test forcing data for DIIID-like example

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PE - NEW FEATURE - Implements GPEC plasma response calculation (resp_index=0)

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PE - IMPROVEMENT - Implements improved flux matrix and surface inductance calculations

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JPEC - REORGANIZE - Set up module structure to integrate IPEC calculations
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JPEC - RENAME - fixed some straggler mentions of "DCON"
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VAC/PE - NEW FEATURE - Computes both Green's functions for proper GPEC surface inductance

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MERGE - Merge ipec branch into perturbed_equilibrium
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FFS - BUG FIX - Fix JPEC.jl to use ForceFreeStates instead of DCON and remove deleted Main.jl include
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FFS - RENAME - Simplify config section from [ForceFreeStates_CONTROL] to [ForceFreeStates]
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EQUIL - REORGANIZE - Deprecate equil.toml, move equilibrium config to [Equilibrium] section in jpec.toml
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EQUIL - REORGANIZE - Deprecate equil.toml, move equilibrium config to [Equilibrium] section in jpec.toml
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Merge: Resolve conflicts keeping properly formatted jpec.toml files
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JPEC - REORGANIZE - Reorder jpec.toml sections: Equilibrium, WALL, ForceFreeStates, PerturbedEquilibrium
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CLEANUP - Remove deprecated files
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JPEC - RENAME - Change [WALL] to [Wall] for CamelCase consistency
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EQUIL - DEPRECATE - Remove unused equilibrium output flags and spline options
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EQUIL - DEPRECATE - Remove all equilibrium output flags and EquilibriumOutput struct

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EQUIL - REFACTOR - Merge EquilibriumControl into EquilibriumConfig

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EQUIL/FFS - NEW FEATURE - Add force_termination flag for graceful early exits

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CONFIG - IMPROVEMENT - Add comprehensive parameter annotations to all jpec.toml files

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Commits on Dec 31, 2025

Commits on Jan 1, 2026

Commits on Jan 2, 2026

DOCS - IMPROVEMENT - Add reference papers and comprehensive CLAUDE.md updates

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Commits on Feb 12, 2026

Commits on Feb 13, 2026