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Make the output_prefix param apply with input TSV paths as well

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#45 In Phenome-Health/biomapper2;

· amykglen opened on Dec 23, 2025

Batch bulk requests to kestrel

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#44 In Phenome-Health/biomapper2;

· amykglen opened on Dec 23, 2025

Add requests caching to Kestrel annotator searches?

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#43 In Phenome-Health/biomapper2;

· amykglen opened on Dec 23, 2025

Behavior around passing an empty list to provided_id_columns

bugSomething isn't workingSomething isn't working

Status: Open.

#33 In Phenome-Health/biomapper2;

· ashenfernando1 opened on Dec 16, 2025

Plan out specialized tools for dataset-to-dataset mapping

planningPlanning and project management tasksPlanning and project management tasks

Status: Open.

Task

#23 In Phenome-Health/biomapper2;

· amykglen opened on Nov 28, 2025

Compare our Arivale mappings to metabolomics lifespan dataset

Status: Open.

Task

#22 In Phenome-Health/biomapper2;

· amykglen opened on Nov 28, 2025

Add a fuzzy search Annotator

Status: Open.

Feature

#21 In Phenome-Health/biomapper2;

· amykglen opened on Nov 28, 2025

Accept Translator KGX JSON Lines format

Status: Open.

Feature

#16 In Phenome-Health/biomapper2;

· amykglen opened on Nov 18, 2025

Improve where output files (from dataset mapping) are saved

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#11 In Phenome-Health/biomapper2;

· amykglen opened on Nov 7, 2025

Plug in KG2-only and SPOKE-only comparisons in mapping performance assessment

Status: Open.

Feature

#9 In Phenome-Health/biomapper2;

· amykglen opened on Nov 7, 2025

·  

mvp1

Allow entity_type to be set per item for dataset mapping

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#5 In Phenome-Health/biomapper2;

· amykglen opened on Nov 7, 2025

Map out full testing and metrics collection strategy

planningPlanning and project management tasksPlanning and project management tasks

Status: Open.

Task

#4 In Phenome-Health/biomapper2;

· amykglen opened on Nov 7, 2025