-
-
Notifications
You must be signed in to change notification settings - Fork 11
Beat nnU-Net #168
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Draft
ATATC
wants to merge
121
commits into
main
Choose a base branch
from
133
base: main
Could not load branches
Branch not found: {{ refName }}
Loading
Could not load tags
Nothing to show
Loading
Are you sure you want to change the base?
Some commits from the old base branch may be removed from the timeline,
and old review comments may become outdated.
Draft
Beat nnU-Net #168
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Open
…onTrainer` to optimize loss computation and simplify overrides. (#133)
…UNetTrainer` and added `DiceBCELossWithLogits` as the loss criterion. (#133)
…ted `num_classes` in `UNetTrainer` to 5. (#133)
…resize256`, `roi`) and introduced `UNetSlidingTrainer` for sliding window training. (#133)
…ction naming. (#133)
… zero-padding in sliding window filenames. (#192)
…atibility with default behavior. (#192)
…, enhancing dataset processing visibility. (#192)
…ding in datasets, and enhanced sliding window handling with `TensorLoader`. (#192)
…dataset preparation in `benchmark.py`. (#133)
… updated the import statement to include the relevant functionality. (#192)
…mplementation with TODOs for patch loading and reconstruction logic. (#192)
…mplementation with TODOs for patch loading and reconstruction logic. (#192)
…nsors. Updated imports. (#133)
…form, modified patch shape usage, and adjusted batch sizes for training and validation loaders. (#133)
… wrapping `PadTo`, streamlining transform composition. (#133)
…with pipeline requirements. (#133)
…pipeline in `benchmark.py` for sliding window preprocessing and dataset handling. (#133)
…aced manual list sorting with `sorted` for improved clarity and efficiency across datasets. (#192)
…validation datasets, and extended imports for dataset integration in segmentation presets. (#192)
… added `images` and `labels` methods, and adjusted `MergedDataset` initialization. (#192)
…ation preset validation logic. (#192)
…ingTrainer` in `unet.py`. (#133)
…er methods, updated validation logic to leverage encapsulation. (#192)
… to `o_val` for clarity and added `set_validation_datasets` call in `UNetTrainer`. (#133)
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Labels
documentation
Improvements or additions to documentation
enhancement
New feature or request
report
Discussed in the meeting
todo
New task or assignment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
See #133.