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Update hgvs_name.py - handle inv cDNA #6

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Update hgvs_name.py - handle inv cDNA #6

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4 changes: 3 additions & 1 deletion pyhgvs/models/hgvs_name.py
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Original file line number Diff line number Diff line change
Expand Up @@ -110,6 +110,7 @@ class HGVSRegex(object):
INS = "(?P<mutation_type>ins)"
DEL = "(?P<mutation_type>del)"
DUP = "(?P<mutation_type>dup)"
INV = "(?P<mutation_type>inv)"

# Simple coordinate syntax
COORD_START = "(?P<start>\d+)"
Expand Down Expand Up @@ -141,12 +142,13 @@ class HGVSRegex(object):
CDNA_START + DEL,
CDNA_START + DUP,

# Insertion, deletion, duplication
# Insertion, deletion, duplication, inversion
CDNA_RANGE + INS + DNA_ALT,
CDNA_RANGE + DEL + DNA_REF,
CDNA_RANGE + DUP + DNA_REF,
CDNA_RANGE + DEL,
CDNA_RANGE + DUP,
CDNA_RANGE + INV,

# Indels
"(?P<delins>" + CDNA_START + 'del' + DNA_REF + 'ins' + DNA_ALT + ")",
Expand Down