T w testing#17

Merged

CarolusVitalis merged 47 commits intomasterfrom

Jan 31, 2025

Commits on Dec 9, 2022

Adding additions to temp3 - more work needing to be done. Framework set up.
wdrav
committed

Commits on Dec 20, 2022

Adding more features to the post-processing tool - Still need to work on finishing the collection conversion and ensuring that every piece of information is passed from one object to another. Also …
wdrav
committed

Commits on Dec 22, 2022

Removed the template property from components which had their cd /Users/williamdravenstott/Desktop/Code ; /usr/bin/env /Users/williamdravenstott/opt/anaconda3/bin/python /Users/williamdravenstott/…
wdrav
committed
Adding full support of components, need to finish the uris checker and combdev -> collection feature
wdrav
committed

Commits on Jan 13, 2023

Added collection creation and uri referencing updating
wdrav
committed

Commits on Jun 8, 2023

Updated the check_name function to allow hyphens in the name.
wdrav
committed

Commits on Jun 19, 2023

Update to post-processing of combinatorial derivations
wdrav
committed

Commits on Jun 20, 2023

Added correct namespace for sequences and made the string literal of elements uppercase
wdrav
committed

Commits on Aug 31, 2023

Addition of output from temp3.py including updates
wdrav
committed

Commits on Sep 5, 2023

Commits on Oct 10, 2023

Updates to give default descriptions to parts.
wdrav
committed

Commits on Dec 7, 2023

Adding two backbones template, output (two_backbones.nt) and post-processing output (two_backnones_ud.nt)
wdrav
committed

Commits on Feb 15, 2024

Added implementation for multiple backbones.
wdrav
committed

Commits on May 7, 2024

Commits on Dec 17, 2024

encoding functions using URIs and sequence search
tayasherstyukova
committed

Commits on Jan 22, 2025

changes as of 1/22/2025
tayasherstyukova
committed
Adding additions to temp3 - more work needing to be done. Framework set up.

wdrav
authored and
tayasherstyukova
committed
Adding more features to the post-processing tool - Still need to work on finishing the collection conversion and ensuring that every piece of information is passed from one object to another. Also …

wdrav
authored and
tayasherstyukova
committed
Removed the template property from components which had their cd /Users/williamdravenstott/Desktop/Code ; /usr/bin/env /Users/williamdravenstott/opt/anaconda3/bin/python /Users/williamdravenstott/…

wdrav
authored and
tayasherstyukova
committed
Adding full support of components, need to finish the uris checker and combdev -> collection feature

wdrav
authored and
tayasherstyukova
committed
Added collection creation and uri referencing updating

wdrav
authored and
tayasherstyukova
committed
Updated the check_name function to allow hyphens in the name.

wdrav
authored and
tayasherstyukova
committed
Update to post-processing of combinatorial derivations

wdrav
authored and
tayasherstyukova
committed
Added correct namespace for sequences and made the string literal of elements uppercase

wdrav
authored and
tayasherstyukova
committed
Addition of output from temp3.py including updates

wdrav
authored and
tayasherstyukova
committed
Changes to stabilize ordering of subcomponents

wdrav
authored and
tayasherstyukova
committed
Edit to replace periods with underscores

wdrav
authored and
tayasherstyukova
committed
Updates to give default descriptions to parts.

wdrav
authored and
tayasherstyukova
committed
Adding two backbones template, output (two_backbones.nt) and post-processing output (two_backnones_ud.nt)

wdrav
authored and
tayasherstyukova
committed
Added implementation for multiple backbones.

wdrav
authored and
tayasherstyukova
committed
Recent updates to temp3 and two_backbones

wdrav
authored and
tayasherstyukova
committed
Worked on changing namespace for GenBank and FASTA

wdrav
authored and
tayasherstyukova
committed
Example output for simple_library

wdrav
authored and
tayasherstyukova
committed
Merge branch 'will_testing' of https://github.com/SynBioDex/Excel-utilities into will_testing
tayasherstyukova
committed

Commits on Jan 23, 2025

Commits on Jan 30, 2025

updated displayId function
tayasherstyukova
committed