Gene identifier conversion tools

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This page is to record notes on external tools that convert gene IDs. The purpose is to look at alternatives to IDecoder on the PhenoGen website.

Web Sites

ID Converter

David

NCBI

AILUN Stanford

genmapp

Biomart Gene ID Conversion Tool

different biomart?

Babelomics

gconvert

biodb

MatchMiner

biodbnet

Kegg

Uniprot

Galaxy

Flybase

AbsIDConvert

Publications

A graph-search framework for associating gene identifiers with documents

Mistaken Identifiers: Gene name errors can be introduced inadvertently when using Excel in bioinformatics

ID Converters Test

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

MatchMiner: a tool for batch navigation among gene and gene product identifiers.

DAVID gene ID conversion tool.

Hyperlink Management System and ID Converter System: enabling maintenance-free hyperlinks among major biological databases.

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

BridgeDb: standardized access to gene, protein and metabolite identifier mapping services

AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities

Programs

R object that provides mappings between entrez gene identifiers and gene abbreviations