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@TravisWheelerLab

Wheeler Lab

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  1. nail nail Public

    Nail is an Alignment Inference tooL

    Rust 54 3

  2. BATH BATH Public

    Better Alignments with Translated HMMER

    C 24 4

  3. ULTRA ULTRA Public

    ULTRA Locates Tandemly Repetitive Areas

    C++ 39 4

  4. sufr sufr Public

    Parallel Construction of Suffix Arrays in Rust

    Rust 26 2

  5. DIPLOMAT DIPLOMAT Public

    Deep learning-based Identity Preserving Labeled-Object Multi-Animal Tracking (Beta)

    Python 8 3

  6. NEAR NEAR Public

    Jupyter Notebook 2

Repositories

Showing 10 of 69 repositories
  • BATH Public

    Better Alignments with Translated HMMER

    TravisWheelerLab/BATH’s past year of commit activity
    C 24 4 1 0 Updated Dec 28, 2025
  • Simpatico Public

    'Simpatico' is the working title for our GNN which uses contrastive learning to produce co-localized embeddings of compatible protein/ligand atoms.

    TravisWheelerLab/Simpatico’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Dec 24, 2025
  • aurora Public
    TravisWheelerLab/aurora’s past year of commit activity
    Rust 2 BSD-3-Clause 0 0 0 Updated Dec 24, 2025
  • nail-benchmarks Public

    A collection of reproducible benchmarks for nail

    TravisWheelerLab/nail-benchmarks’s past year of commit activity
    Python 0 0 0 0 Updated Dec 23, 2025
  • MiRROR Public

    Masses in Reflection Reveal Ordered Residues

    TravisWheelerLab/MiRROR’s past year of commit activity
    Python 0 0 0 0 Updated Dec 11, 2025
  • nail Public

    Nail is an Alignment Inference tooL

    TravisWheelerLab/nail’s past year of commit activity
    Rust 54 BSD-3-Clause 3 0 0 Updated Dec 10, 2025
  • sculu-rs Public

    Rust implementation of SCULU (Subfamily Clustering Using Label Uncertainty)

    TravisWheelerLab/sculu-rs’s past year of commit activity
    Rust 0 BSD-3-Clause 0 0 0 Updated Dec 10, 2025
  • stk2fasta Public

    Split Stockholm file into FASTA files

    TravisWheelerLab/stk2fasta’s past year of commit activity
    Rust 1 BSD-3-Clause 0 0 0 Updated Dec 9, 2025
  • DIPLOMAT Public

    Deep learning-based Identity Preserving Labeled-Object Multi-Animal Tracking (Beta)

    TravisWheelerLab/DIPLOMAT’s past year of commit activity
    Python 8 BSD-3-Clause 3 1 0 Updated Nov 8, 2025
  • ULTRA Public

    ULTRA Locates Tandemly Repetitive Areas

    TravisWheelerLab/ULTRA’s past year of commit activity
    C++ 39 BSD-3-Clause 4 2 0 Updated Oct 23, 2025
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