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[NET-258] Diagnostic Plots fail to open #95

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Merged
pollaro merged 1 commit into from
Jan 9, 2025
Merged

[NET-258] Diagnostic Plots fail to open #95

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12 changes: 6 additions & 6 deletions +nla/+gfx/+plots/DiagnosticPlot.m
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Original file line number Diff line number Diff line change
Expand Up @@ -24,14 +24,14 @@
end
end

function displayPlots(obj, ranking_algorithm)
function displayPlots(obj, test_method)

p_value = obj.choosePlottingStatistic(ranking_algorithm);
p_value = nla.net.result.NetworkTestResult().getPValueNames(test_method, obj.networkTestResult.test_name);

plot_parameters = nla.net.result.NetworkResultPlotParameter(...
obj.networkTestResult, obj.network_atlas, obj.network_test_options...
);
vs_network_size_parameters = plot_parameters.plotProbabilityVsNetworkSize(ranking_algorithm, p_value);
vs_network_size_parameters = plot_parameters.plotProbabilityVsNetworkSize(test_method, p_value);
no_permutations_vs_network_parameters = plot_parameters.plotProbabilityVsNetworkSize(...
"no_permutations", p_value...
);
Expand All @@ -40,7 +40,7 @@ function displayPlots(obj, ranking_algorithm)
permuted_title = sprintf("Permuted P-values vs Network-Pair Size");

plotter = nla.net.result.plot.PermutationTestPlotter(obj.network_atlas);
if isequal(ranking_algorithm, "no_permutations")
if isequal(test_method, "no_permutations")
nla.gfx.createFigure(500, 500);
plotter.plotProbabilityVsNetworkSize(vs_network_size_parameters, subplot(1, 1, 1), non_permuted_title);
return
Expand All @@ -49,8 +49,8 @@ function displayPlots(obj, ranking_algorithm)

p_value_histogram = obj.networkTestResult.createHistogram(p_value);
plotter.plotProbabilityHistogram(...
subplot(1, 3, 1), p_value_histogram, obj.networkTestResult.full_connectome.statistic_p_value.v,...
obj.networkTestResult.permutation_results.p_value_permutations.v(:, 1),...
subplot(1, 3, 1), p_value_histogram, obj.networkTestResult.full_connectome.(strcat("uncorrected_", p_value)).v,...
obj.networkTestResult.permutation_results.(strcat(p_value, "_permutations")).v(:, 1),...
obj.networkTestResult.test_display_name, obj.network_test_options.prob_max...
);
plotter.plotProbabilityVsNetworkSize(no_permutations_vs_network_parameters, subplot(1, 3, 2), non_permuted_title);
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