Alerts Implementation

[avireusdev11]

Implementation to Generate Array of Alerts Warnings to be Associated with Each Primer.

[David-Bianchi]

Thanks @avireusdev11 I'll check out your codon table updates today, and also we can link this to the relevant issue in the Github as well when we are closer to closing the PR etc.

[David-Bianchi]

Awesome! Warnings look great, initially for a random sequence/translation table combination.

I'll check out the output files as well.

[David-Bianchi]

@avireusdev11 we'll have to check what version of primer3 we want to be using, I thought we are using this one from requirements.txt

But I'm confused because it says there's a deprecation of .calcHairpin() since v1.0?: https://libnano.github.io/primer3-py/api/bindings.html

I thought maybe it should be calc_hairpin() instead like shown here: https://pypi.org/project/primer3-py/

Maybe just a weird labeling thing haha, because looks like it is working fine, but we can double check. Thanks for including the link out in the function header, that's great!