SET_extractor

SET-extractor is a python program to identify and extract the SET domain sequence within protein sequences.

USAGE

./SET_extractor.py infile(.faa) output

There are only two external dependencies that should be installed before using SET-extractor:

• HMMER: biosequence analysis using profile hidden Markov model. http://hmmer.org

• fasta_formatter. apt-get install fastx-toolkit

OUTPUTS

• a bed file with the SET domain's coordinates.

• SET sequence file.