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idea: use input file lol #100

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Merged
arjunsavel merged 1 commit into from
Mar 3, 2025
Merged

idea: use input file lol #100

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77 changes: 38 additions & 39 deletions src/scope/input_output.py
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Expand Up @@ -301,45 +301,44 @@ def write_input_file(data, output_file_path="input.txt"):
def parse_arguments():
parser = argparse.ArgumentParser(description='Simulate observation')

# Required parameters
parser.add_argument('--planet_spectrum_path', type=str, default=".", help='Path to planet spectrum')
parser.add_argument('--star_spectrum_path', type=str, default=".", help='Path to star spectrum')
parser.add_argument('--data_cube_path', type=str, default=".", help='Path to data cube')
# Input file argument (required)
parser.add_argument('--input_file', type=str, default="input.txt",
help='Input file with parameters (default: input.txt)')

# Optional parameters with their defaults matching your function
parser.add_argument('--phase_start', type=float, default=0, help='Start phase of the simulated observations')
parser.add_argument('--phase_end', type=float, default=1, help='End phase of the simulated observations')
parser.add_argument('--n_exposures', type=int, default=10, help='Number of exposures')
parser.add_argument('--observation', type=str, default="emission", help='Observation type')
parser.add_argument('--blaze', type=bool, default=True, help='Blaze flag')
parser.add_argument('--n_princ_comp', type=int, default=4, help='Number of principal components')
parser.add_argument('--star', type=bool, default=True, help='Star flag')
parser.add_argument('--SNR', type=float, default=250, help='Signal to noise ratio')
parser.add_argument('--telluric', type=bool, default=True, help='Telluric flag')
parser.add_argument('--tell_type', type=str, default="data-driven", help='Telluric type')
parser.add_argument('--time_dep_tell', type=bool, default=False, help='Time dependent telluric')
parser.add_argument('--wav_error', type=bool, default=False, help='Wavelength error flag')
parser.add_argument('--rv_semiamp_orbit', type=float, default=0.3229, help='RV semi-amplitude orbit')
parser.add_argument('--order_dep_throughput', type=bool, default=True, help='Order dependent throughput')
parser.add_argument('--Rp', type=float, default=1.21, help='Planet radius (Jupiter radii)')
parser.add_argument('--Rstar', type=float, default=0.955, help='Star radius (solar radii)')
parser.add_argument('--kp', type=float, default=192.02, help='Planetary orbital velocity (km/s)')
parser.add_argument('--v_rot', type=float, default=4.5, help='Rotation velocity')
parser.add_argument('--scale', type=float, default=1.0, help='Scale factor')
parser.add_argument('--v_sys', type=float, default=0.0, help='Systemic velocity')
parser.add_argument('--modelname', type=str, default="yourfirstsimulation", help='Model name')
parser.add_argument('--divide_out_of_transit', type=bool, default=False, help='Divide out of transit')
parser.add_argument('--out_of_transit_dur', type=float, default=0.1, help='Out of transit duration')
parser.add_argument('--include_rm', type=bool, default=False, help='Include RM effect')
parser.add_argument('--v_rot_star', type=float, default=3.0, help='Star rotation velocity')
parser.add_argument('--a', type=float, default=0.033, help='Semi-major axis')
parser.add_argument('--lambda_misalign', type=float, default=0.0, help='Misalignment angle')
parser.add_argument('--inc', type=float, default=90.0, help='Inclination')
parser.add_argument('--seed', type=int, default=42, help='Random seed')
parser.add_argument('--LD', type=bool, default=True, help='Limb darkening')
parser.add_argument('--vary_throughput', type=bool, default=True, help='Vary throughput')

# For file input option
parser.add_argument('--input_file', type=str, default="input.txt", help='Input file with parameters')
# All other parameters without default values
parser.add_argument('--planet_spectrum_path', type=str, help='Path to planet spectrum')
parser.add_argument('--star_spectrum_path', type=str, help='Path to star spectrum')
parser.add_argument('--data_cube_path', type=str, help='Path to data cube')
parser.add_argument('--phase_start', type=float, help='Start phase')
parser.add_argument('--phase_end', type=float, help='End phase')
parser.add_argument('--n_exposures', type=int, help='Number of exposures')
parser.add_argument('--observation', type=str, help='Observation type')
parser.add_argument('--blaze', type=lambda x: x.lower() == 'true', help='Blaze flag')
parser.add_argument('--n_princ_comp', type=int, help='Number of principal components')
parser.add_argument('--star', type=lambda x: x.lower() == 'true', help='Star flag')
parser.add_argument('--SNR', type=float, help='Signal to noise ratio')
parser.add_argument('--telluric', type=lambda x: x.lower() == 'true', help='Telluric flag')
parser.add_argument('--tell_type', type=str, help='Telluric type')
parser.add_argument('--time_dep_tell', type=lambda x: x.lower() == 'true', help='Time dependent telluric')
parser.add_argument('--wav_error', type=lambda x: x.lower() == 'true', help='Wavelength error flag')
parser.add_argument('--rv_semiamp_orbit', type=float, help='RV semi-amplitude orbit')
parser.add_argument('--order_dep_throughput', type=lambda x: x.lower() == 'true', help='Order dependent throughput')
parser.add_argument('--Rp', type=float, help='Planet radius (Jupiter radii)')
parser.add_argument('--Rstar', type=float, help='Star radius (solar radii)')
parser.add_argument('--kp', type=float, help='Planetary orbital velocity (km/s)')
parser.add_argument('--v_rot', type=float, help='Rotation velocity')
parser.add_argument('--scale', type=float, help='Scale factor')
parser.add_argument('--v_sys', type=float, help='Systemic velocity')
parser.add_argument('--modelname', type=str, help='Model name')
parser.add_argument('--divide_out_of_transit', type=lambda x: x.lower() == 'true', help='Divide out of transit')
parser.add_argument('--out_of_transit_dur', type=float, help='Out of transit duration')
parser.add_argument('--include_rm', type=lambda x: x.lower() == 'true', help='Include RM effect')
parser.add_argument('--v_rot_star', type=float, help='Star rotation velocity')
parser.add_argument('--a', type=float, help='Semi-major axis')
parser.add_argument('--lambda_misalign', type=float, help='Misalignment angle')
parser.add_argument('--inc', type=float, help='Inclination')
parser.add_argument('--seed', type=int, help='Random seed')
parser.add_argument('--LD', type=lambda x: x.lower() == 'true', help='Limb darkening')
parser.add_argument('--vary_throughput', type=lambda x: x.lower() == 'true', help='Vary throughput')

return parser.parse_args()
1 change: 1 addition & 0 deletions src/scope/run_simulation.py
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Original file line number Diff line number Diff line change
Expand Up @@ -594,6 +594,7 @@ def simulate_observation(

if __name__ == "__main__":
args = parse_arguments()

# First, parse the input file to get base parameters
inputs = parse_input_file(args.input_file)

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