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add seed to filename #102

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Merged
arjunsavel merged 1 commit into from
Mar 3, 2025
Merged

add seed to filename #102

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29 changes: 12 additions & 17 deletions src/scope/run_simulation.py
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Original file line number Diff line number Diff line change
Expand Up @@ -4,14 +4,9 @@
calculating the log likelihood and cross-correlation function of the data given the model parameters.
"""

import os

import numpy as np
from tqdm import tqdm

from scope.broadening import *
from scope.ccf import *
from scope.input_output import parse_input_file, write_input_file, parse_arguments
from scope.input_output import *
from scope.noise import *
from scope.tellurics import *
from scope.utils import *
Expand Down Expand Up @@ -92,7 +87,7 @@ def make_data(
rv_planet, rv_star = calc_rvs(
v_sys, v_sys_measured, Kp, rv_semiamp_orbit, phases
) # measured in m/s now

flux_cube = np.zeros(
(n_order, n_exposure, n_pixel)
) # will store planet and star signal
Expand Down Expand Up @@ -120,7 +115,7 @@ def make_data(
star,
observation,
)

throughput_baselines = np.loadtxt(abs_path + "/data/throughputs.txt")

flux_cube = detrend_cube(flux_cube, n_order, n_exposure)
Expand Down Expand Up @@ -275,7 +270,7 @@ def make_data(
) # returning CCF and logL values


#@njit
# @njit
def calc_log_likelihood(
v_sys,
Kp,
Expand Down Expand Up @@ -432,7 +427,7 @@ def simulate_observation(
lambda_misalign=0.0,
inc=90.0,
seed=42,
LD=True,
LD=True,
vary_throughput=True,
instrument="IGRINS",
snr_path=None,
Expand Down Expand Up @@ -502,7 +497,7 @@ def simulate_observation(
# instrument profile convolution
instrument_kernel = get_instrument_kernel(instrument)
Fp_conv = np.convolve(Fp_conv_rot, instrument_kernel, mode="same")
print('here spectrum')
print("here spectrum")
print(Fp_conv)
star_wave, star_flux = np.loadtxt(
star_spectrum_path
Expand Down Expand Up @@ -555,7 +550,7 @@ def simulate_observation(
instrument=instrument,
)

run_name = f"{n_princ_comp}_NPC_{blaze}_blaze_{star}_star_{telluric}_telluric_{SNR}_SNR_{tell_type}_{time_dep_tell}_{wav_error}_{order_dep_throughput}"
run_name = f"{n_princ_comp}_NPC_{blaze}_blaze_{star}_star_{telluric}_telluric_{SNR}_SNR_{tell_type}_{time_dep_tell}_{wav_error}_{order_dep_throughput}_{seed}"

save_data(outdir, run_name, flux_cube, flux_cube_nopca, A_noplanet, just_tellurics)

Expand Down Expand Up @@ -585,7 +580,7 @@ def simulate_observation(
star=star,
observation=observation,
v_sys_measured=v_sys,
LD=LD
LD=LD,
)
lls[l, k], ccfs[l, k] = res

Expand All @@ -596,17 +591,17 @@ def simulate_observation(
args = parse_arguments()
# First, parse the input file to get base parameters
inputs = parse_input_file(args.input_file)

# Then override with any command line arguments that were explicitly provided
args_dict = vars(args)
for key, value in args_dict.items():
# Skip the input_file parameter
if key == 'input_file':
if key == "input_file":
continue

# Only override if the argument was explicitly provided (not None)
if value is not None:
inputs[key] = value

# Call the simulation function with the merged parameters
simulate_observation(**inputs)
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