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@azizilab

azizilab

Computational Cancer Biology Lab at Columbia University

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  1. starfysh starfysh Public

    Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

    Jupyter Notebook 128 16

  2. decipher decipher Public

    A single-cell analysis toolkit to jointly analyze samples from distinct conditions

    Python 34 3

  3. sdcd sdcd Public

    Stable Differentiable Causal Discovery (SDCD)

    Jupyter Notebook 26 3

  4. amici amici Public

    Cross-attention-based cell-cell interaction inference from ST data.

    Python 17 1

  5. DIISCO_public DIISCO_public Public

    Publically accessible code for DIISCO method

    Jupyter Notebook 12 1

  6. starfysh_reproducibility starfysh_reproducibility Public

    Jupyter Notebook 7 2

Repositories

Showing 10 of 19 repositories
  • echidna_reproducibility Public
    azizilab/echidna_reproducibility’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Feb 13, 2026
  • amici Public

    Cross-attention-based cell-cell interaction inference from ST data.

    azizilab/amici’s past year of commit activity
    Python 17 1 0 2 Updated Feb 2, 2026
  • arcadia_reproducibility Public
    azizilab/arcadia_reproducibility’s past year of commit activity
    Python 0 0 0 0 Updated Jan 20, 2026
  • ARCADIA_public Public
    azizilab/ARCADIA_public’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Jan 20, 2026
  • DIISCO_public Public

    Publically accessible code for DIISCO method

    azizilab/DIISCO_public’s past year of commit activity
    Jupyter Notebook 12 MIT 1 5 1 Updated Oct 15, 2025
  • GVHD_Reproducibility Public
    azizilab/GVHD_Reproducibility’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 3, 2025
  • mel_icb_reproducibility Public
    azizilab/mel_icb_reproducibility’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 25, 2025
  • chemokine_receptor_reproducibility Public
    azizilab/chemokine_receptor_reproducibility’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 5, 2025
  • echidna Public

    Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation

    azizilab/echidna’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Jul 24, 2025
  • starfysh Public

    Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

    azizilab/starfysh’s past year of commit activity
    Jupyter Notebook 128 BSD-3-Clause 16 3 0 Updated May 29, 2025
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