ribios (R interface to BIOS) is a suite of R packages for computational biology and bioinformatics, developed by the Bioinformatics group at Roche (bedapub).
| Package | Description | Status |
|---|---|---|
| ribiosUtils | Utilities from and Interface to the 'Bioinfo-C' ('BIOS') Library |  |
| ribiosIO | Input/Output Utilities of 'ribios' |  |
| ribiosPlot | Plotting Module of 'ribios' |  |
| ribiosMath | Mathematical and Statistical Tools in 'ribios' |  |
| ribiosGraph | Manipulate and Visualize Graphs in 'ribios' |  |
| ribiosExpression | Gene Expression Analysis in 'ribios' |  |
| ribiosAnnotation | Annotation of Genes, RNAs, and Proteins in 'ribios' |  |
| ribiosNGS | Handling Next-Generation Sequencing ('NGS') data in 'ribios' |  |
| ribiosGSEA | Gene-Set Enrichment Analysis Tools in 'ribios' |  |
Install all ribios packages and their dependencies using one of the provided scripts:
From the shell:
bash install_ribios.shFrom R:
source("install_ribios.Rscript")Both scripts install Bioconductor and CRAN dependencies first, then install the ribios packages from GitHub in dependency order.
I used CRAN-check.md to instruct Claude Code to check the packages before submission to CRAN or Bioconductor.