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Fix matplotlib 3.9.0 failure #313

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Fix matplotlib 3.9.0 failure #313

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f292b6f
Fix matplotlib 3.9.0 failure
jolaem Jun 5, 2024
199beff
Fix black
jolaem Jun 5, 2024
75d4f71
Merge branch 'develop' into 312-fix-matplotlib-version-fail
jolaem Jun 5, 2024
9d20792
Fix missing bracket
jolaem Jun 5, 2024
868de21
Fix font
jolaem Jun 5, 2024
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5 changes: 4 additions & 1 deletion avae/vis.py
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,7 @@
import typing

import altair
import matplotlib
import matplotlib.gridspec as gridspec
import matplotlib.pyplot as plt
import numpy as np
Expand Down Expand Up @@ -1886,7 +1887,9 @@ def plot_affinity_matrix(
ax = plt.subplot(gs[0])
ax.set_title("Affinity Matrix", fontsize=16)

im = ax.imshow(lookup, vmin=-1, vmax=1, cmap=plt.get_cmap("RdBu"))
im = ax.imshow(
lookup, vmin=-1, vmax=1, cmap=matplotlib.colormaps.get_cmap("RdBu")
)

ax.set_xticks(np.arange(0, len(all_classes)))
ax.set_xticklabels(all_classes)
Expand Down