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2 changes: 1 addition & 1 deletion hs2p/configs/default.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@ tiling:
drop_holes: false # whether or not to drop tiles whose center pixel falls withing an identified holes
use_padding: true # whether to pad the border of the slide
seg_params:
downsample: 16 # find the closest downsample in the slide for tissue segmentation
downsample: 64 # find the closest downsample in the slide for tissue segmentation
sthresh: 8 # segmentation threshold (positive integer, using a higher threshold leads to less foreground and more background detection) (not used when use_otsu=True)
sthresh_up: 255 # upper threshold value for scaling the binary mask
mthresh: 7 # median filter size (positive, odd integer)
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