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Computational and Statistical Genomics Lab

The GitHub page of CSG lab at McGill University

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  1. GEDI GEDI Public

    Gene Expression Decomposition and Integration

    HTML 19

  2. REMBRANDTS REMBRANDTS Public

    REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R 14 11

  3. CRIES CRIES Public

    Counting Reads for Intronic and Exonic Segments

    R 9 1

  4. DiffRAC DiffRAC Public

    A flexible R function for comparing response proportions in sequencing count data

    R 8 1

  5. MPAQT MPAQT Public

    Shell 8

  6. RCADE2 RCADE2 Public

    Recognition Code-Assisted Discovery of regulatory Elements v2

    C++ 5 1

Repositories

Showing 10 of 31 repositories
  • gedi2 Public

    A high-performance R package for single-cell genomics

    csglab/gedi2’s past year of commit activity
    R 2 MIT 0 0 0 Updated Jan 29, 2026
  • gedi2py Public

    A high-performance Python package for single-cell genomics

    csglab/gedi2py’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 29, 2026
  • sclsd-manuscript Public

    Notebooks for reproducing manuscript figures and analyses.

    csglab/sclsd-manuscript’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 22, 2026
  • sclsd Public

    Single Cell Latent State Dynamics (scLSD)

    csglab/sclsd’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 15, 2026
  • splikit Public

    Splikit /ˈsplaɪ.kɪt/ is a toolkit designed for analyzing high-dimensional single-cell splicing data.

    csglab/splikit’s past year of commit activity
    R 1 0 0 0 Updated Dec 19, 2025
  • gedi2_manuscript Public

    Reproducible Code for the gedi2 Manuscript

    csglab/gedi2_manuscript’s past year of commit activity
    R 0 0 0 0 Updated Nov 21, 2025
  • mach-1-manuscript Public

    Pre-/Post-Mach-1 Analyses Scripts and Notebooks

    csglab/mach-1-manuscript’s past year of commit activity
    R 0 MIT 1 1 0 Updated Oct 3, 2025
  • mach-1.5-prep Public

    Scripts to download, preprocess, and compress NCBI RefSeq annotations and genomes for training Mach-1.5 models.

    csglab/mach-1.5-prep’s past year of commit activity
    R 0 0 0 0 Updated Jul 15, 2025
  • MPAQT Public
    csglab/MPAQT’s past year of commit activity
    Shell 8 MIT 0 0 0 Updated May 28, 2025
  • GEDI Public

    Gene Expression Decomposition and Integration

    csglab/GEDI’s past year of commit activity
    HTML 19 BSD-2-Clause 0 1 0 Updated Feb 19, 2025
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