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Java OpenMP patternlets and exemplar #3

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@rkurniawati rkurniawati commented Aug 29, 2021

This pull request include the following changes:

  • get the latest version of the MPI notebooks
  • added a Java version of the drug design exemplar that uses the Pyjama compiler/runtime to provide OpenMP-like support. The Makefile will download Pyjama with additional fixes from Tennessee Tech.
  • added Java OpenMP with Pyjama patternlets as a submodule

Feel free to make changes before merging this pull request. Let me know if you need any additional info.

Thanks,
Ruth

@rkurniawati
OpenMP examples using Pyjama in Java: 00 and 01
c14ac9f
@rkurniawati
More patternlets
98b2cc4
@rkurniawati
Added Barrier and MasterWorker. Added a Makefile to pull Pyjama lib.
107c36e
@rkurniawati
Added ParallelLoopEqualChunks
c929908
@rkurniawati
Added ParallelLoopChunksOf1
01a9e86
@rkurniawati
Added reduction example. Use shared clause instead of static for Spmd…
194d287 
…2, added code to add random delay. Clean up ParallelLoopEqualChunks.java
@rkurniawati
Removed c source code
769fec9
@rkurniawati
vscode config files
5d84e27
@rkurniawati
Failed attempt for custom reduction
4a18b1f
@rkurniawati
Using long in the factorial calc and multiplication operator in the r…
3b019e3 
…eduction. Not very interesting since we will get overflow when n > 20
@rkurniawati
Use reduction with max function (example from Thomas Hines)
5062258
@rkurniawati
reduce array size - we run out of heap space with n = 100,000,000
8815cf2
@rkurniawati
Fixed Reduction2. Added an example to explore dynamic scheduling
7c0b881
@rkurniawati
make class not public to be consistent with other examples
e8f635c
@rkurniawati
Added example on omp section
4775440
@rkurniawati
Added example of private omp clause
3b0349a
@rkurniawati
remove c code
433d5bd
@rkurniawati
Added examples for the critical and atomic clause, with an explanatio…
8842921 
…n that the support for atomic clause in Pyjama is not equivalent to native support
@rkurniawati
Use ThreadLocalRandom instead of a shared Random
2107580
@rkurniawati
fixed the commented code -- now it is equivalent to the for loop with…
29e267b 
… schedule(static,1)
@rkurniawati
Added a simpler example of dynamic scheduling
4b2933b
@rkurniawati
Removed pyjama patternlets from CSinParallel repo, getting ready to u…
c8c290e 
…se submodule instead
@rkurniawati
Added the pyjama submodule
d7a608b
@rkurniawati
update submodules
84bbee8
@rkurniawati
update pyjama submodule
f80109e
@rkurniawati
Initial version of Drug Design Exemplar in Java with Pyjama
ba51138
@rkurniawati
Added omp directive, track timing
d746c1f
@rkurniawati
Added rules for DDPyjama
687738e
@rkurniawati
Minor changes
c50eb71
@rkurniawati
fixed args issue
7a1ae18
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