Update README.md for CLI accuracy and supported agents

[yacosta738]

I have reviewed the codebase and updated the README.md to ensure it accurately reflects the current state of the CLI.

Key changes include:

• Updated agentsync init usage to include [--path <path>] and [--force].
• Updated agentsync apply and clean usage to include missing configuration flags.
• Updated agentsync doctor usage to include [--project-root <path>].
• Updated agentsync status usage for consistency.
• Updated agentsync skill subcommands to include [--project-root <path>], [--source <source>], and [--json].

These changes were verified against the actual CLI implementation in src/main.rs and relevant command modules. All tests passed.

---

PR created automatically by Jules for task 9759776773187079799 started by @yacosta738

[google-labs-jules]

👋 Jules, reporting for duty! I'm here to lend a hand with this pull request.

When you start a review, I'll add a 👀 emoji to each comment to let you know I've read it. I'll focus on feedback directed at me and will do my best to stay out of conversations between you and other bots or reviewers to keep the noise down.

I'll push a commit with your requested changes shortly after. Please note there might be a delay between these steps, but rest assured I'm on the job!

For more direct control, you can switch me to Reactive Mode. When this mode is on, I will only act on comments where you specifically mention me with @jules. You can find this option in the Pull Request section of your global Jules UI settings. You can always switch back!

New to Jules? Learn more at jules.google/docs.

---

For security, I will only act on instructions from the user who triggered this task.

[github-actions]

Hey there and thank you for opening this pull request!

We require pull request titles to follow the Conventional Commits specification and it looks like your proposed title needs to be adjusted.

Details:

No release type found in pull request title "Update README.md for CLI accuracy and supported agents". Add a prefix to indicate what kind of release this pull request corresponds to. For reference, see https://www.conventionalcommits.org/

Available types:
 - feat: A new feature
 - fix: A bug fix
 - docs: Documentation only changes
 - style: Changes that do not affect the meaning of the code (white-space, formatting, missing semi-colons, etc)
 - refactor: A code change that neither fixes a bug nor adds a feature
 - perf: A code change that improves performance
 - test: Adding missing tests or correcting existing tests
 - build: Changes that affect the build system or external dependencies (example scopes: gulp, broccoli, npm)
 - ci: Changes to our CI configuration files and scripts (example scopes: Travis, Circle, BrowserStack, SauceLabs)
 - chore: Other changes that don't modify src or test files
 - revert: Reverts a previous commit

[coderabbitai]

📝 Walkthrough

Summary by CodeRabbit

• Documentation
  • Updated CLI command documentation with new optional flags for enhanced customization, including path targeting, configuration options, and filtering capabilities across initialization, application, cleaning, status, diagnostics, and skill management commands.

Walkthrough

Updates README documentation to introduce optional path-targeting and configuration flags across CLI commands including init, apply, clean, status, doctor, and skill operations. Consolidates skill command syntax and adds new options for verbosity, filtering, and JSON output formatting.

Changes

Cohort / File(s)	Summary
CLI Command Documentation README.md	Adds optional flags (--path, --force, --config, --project-root, --json, --source) to multiple CLI commands and consolidates skill command syntax with enhanced options.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Poem

🐰 With flags now dancing, so many and bright,
Each command grows stronger, more tailored and right,
The README now shimmers with options galore,
Path-targeting powers we never had before! ✨

🚥 Pre-merge checks | ✅ 3

✅ Passed checks (3 passed)

Check name	Status	Explanation
Title check	✅ Passed	The title accurately reflects the main change: updating README.md to document current CLI functionality with proper flags and agent support.
Description check	✅ Passed	The description is directly related to the changeset, detailing specific CLI command updates and verification against the implementation.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Post copyable unit tests in a comment
• Commit unit tests in branch docs-update-readme-cli-accuracy-9759776773187079799

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands and usage tips.}

[github-actions]

✅ Contributor Report

User: @yacosta738
Status: Passed (12/13 metrics passed)

Metric	Description	Value	Threshold	Status
PR Merge Rate	PRs merged vs closed	89%	>= 30%	✅
Repo Quality	Repos with ≥100 stars	0	>= 0	✅
Positive Reactions	Positive reactions received	9	>= 1	✅
Negative Reactions	Negative reactions received	0	<= 5	✅
Account Age	GitHub account age	3029 days	>= 30 days	✅
Activity Consistency	Regular activity over time	108%	>= 0%	✅
Issue Engagement	Issues with community engagement	0	>= 0	✅
Code Reviews	Code reviews given to others	344	>= 0	✅
Merger Diversity	Unique maintainers who merged PRs	3	>= 0	✅
Repo History Merge Rate	Merge rate in this repo	0.8108108108108109	>= 0	✅
Repo History Min PRs	Previous PRs in this repo	76	>= 0	✅
Profile Completeness	Profile richness (bio, followers)	90	>= 0	✅
Suspicious Patterns	Spam-like activity detection	1	N/A	❌

---

_{Contributor Report evaluates based on public GitHub activity. Analysis period: 2025-02-11 to 2026-02-11}

[coderabbitai]

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)

README.md (1)

202-235: 🧹 Nitpick | 🔵 Trivial

The flag naming difference is intentional and correctly documented; consider adding clarification about the semantic distinction.

The documentation accurately reflects the implementation: init, apply, and clean commands use --path (with -p short flag), while status, doctor, and skill commands use --project-root. This appears to be deliberate—configuration-modification commands use --path, while inspection/status commands use --project-root. Adding a note explaining this semantic distinction would improve clarity for users.