Update README.md for skill command accuracy

[yacosta738]

Reviewed the entire codebase and README.md for accuracy. Verified supported agents, CLI flags, requirements, and project structure. Applied minimal necessary updates to the skill command documentation in README.md to include missing but essential --source and --json flags. Reverted stylistic changes and accidental modifications to other files to adhere to strict minimal-update constraints. Verified changes with full test suite.

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PR created automatically by Jules for task 6488899572097453083 started by @yacosta738

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[github-actions]

Hey there and thank you for opening this pull request!

We require pull request titles to follow the Conventional Commits specification and it looks like your proposed title needs to be adjusted.

Details:

No release type found in pull request title "Update README.md for skill command accuracy". Add a prefix to indicate what kind of release this pull request corresponds to. For reference, see https://www.conventionalcommits.org/

Available types:
 - feat: A new feature
 - fix: A bug fix
 - docs: Documentation only changes
 - style: Changes that do not affect the meaning of the code (white-space, formatting, missing semi-colons, etc)
 - refactor: A code change that neither fixes a bug nor adds a feature
 - perf: A code change that improves performance
 - test: Adding missing tests or correcting existing tests
 - build: Changes that affect the build system or external dependencies (example scopes: gulp, broccoli, npm)
 - ci: Changes to our CI configuration files and scripts (example scopes: Travis, Circle, BrowserStack, SauceLabs)
 - chore: Other changes that don't modify src or test files
 - revert: Reverts a previous commit

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✨ Finishing touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Post copyable unit tests in a comment
• Commit unit tests in branch update-readme-skill-flags-6488899572097453083

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[github-actions]

✅ Contributor Report

User: @yacosta738
Status: Passed (12/13 metrics passed)

Metric	Description	Value	Threshold	Status
PR Merge Rate	PRs merged vs closed	89%	>= 30%	✅
Repo Quality	Repos with ≥100 stars	0	>= 0	✅
Positive Reactions	Positive reactions received	9	>= 1	✅
Negative Reactions	Negative reactions received	0	<= 5	✅
Account Age	GitHub account age	3034 days	>= 30 days	✅
Activity Consistency	Regular activity over time	108%	>= 0%	✅
Issue Engagement	Issues with community engagement	0	>= 0	✅
Code Reviews	Code reviews given to others	362	>= 0	✅
Merger Diversity	Unique maintainers who merged PRs	3	>= 0	✅
Repo History Merge Rate	Merge rate in this repo	0.8133333333333334	>= 0	✅
Repo History Min PRs	Previous PRs in this repo	82	>= 0	✅
Profile Completeness	Profile richness (bio, followers)	90	>= 0	✅
Suspicious Patterns	Spam-like activity detection	1	N/A	❌

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_{Contributor Report evaluates based on public GitHub activity. Analysis period: 2025-02-16 to 2026-02-16}