Search results

Use gatk's farm to convert vcf2fasta

new featureNew featureNew feature

Status: Open.

#20 In deepcelllineage/mitolin;

· Deena-B opened on Aug 5, 2019

Update fastq2vcf script according to mitolin plan

enhancementMake something that already exists betterMake something that already exists better

Status: Open.

#19 In deepcelllineage/mitolin;

· Deena-B opened on Aug 5, 2019

Find Distance Calculation in source code from Sankaran Lab

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#17 In deepcelllineage/mitolin;

· Deena-B opened on Jul 27, 2019

Find Distance Calculation in source code from Chang Lab

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#16 In deepcelllineage/mitolin;

· Deena-B opened on Jul 27, 2019

Label cells with B, LP, & LT classes

1-4 hoursThis task will probably take about 1-4 hoursThis task will probably take about 1-4 hours

easy (relatively)This should be a relatively easy concept to grasp or straight forward task to completeThis should be a relatively easy concept to grasp or straight forward task to complete

good first issueGood for newcomersGood for newcomers

Status: Open.

#15 In deepcelllineage/mitolin;

· Deena-B opened on Jul 16, 2019

Write a tutorial that explains how nucleotide distance matrices are generated

4-12 hoursThis task will probably take about 4-12 hoursThis task will probably take about 4-12 hours

basic bash or pythonThis problem can be solved with basic bash or pythonThis problem can be solved with basic bash or python

good first issueGood for newcomersGood for newcomers

quirks of the fieldYou will learn things that most people outside the field don't graspYou will learn things that most people outside the field don't grasp

Status: Open.

#12 In deepcelllineage/mitolin;

· Deena-B opened on Jul 15, 2019

Annotate a-helices, b-sheets, and loops of mitochondiral protein cytochrome b

>12 hoursThis task will probably take more than 12 hours to completeThis task will probably take more than 12 hours to complete

good first issueGood for newcomersGood for newcomers

quirks of the fieldYou will learn things that most people outside the field don't graspYou will learn things that most people outside the field don't grasp

Status: Open.

#11 In deepcelllineage/mitolin;

· Deena-B opened on Jul 11, 2019

Generate a text file with cytochrome b function and pathway attributes

4-12 hoursThis task will probably take about 4-12 hoursThis task will probably take about 4-12 hours

good first issueGood for newcomersGood for newcomers

quirks of the fieldYou will learn things that most people outside the field don't graspYou will learn things that most people outside the field don't grasp

Status: Open.

#10 In deepcelllineage/mitolin;

· Deena-B opened on Jul 11, 2019

Create an architecture for open source data exchange

4-12 hoursThis task will probably take about 4-12 hoursThis task will probably take about 4-12 hours

good first issueGood for newcomersGood for newcomers

Status: Open.

#9 In deepcelllineage/mitolin;

· Deena-B opened on Jul 11, 2019

Annotate mitochondrial DNA fasta files with genes

>12 hoursThis task will probably take more than 12 hours to completeThis task will probably take more than 12 hours to complete

good first issueGood for newcomersGood for newcomers

quirks of the fieldYou will learn things that most people outside the field don't graspYou will learn things that most people outside the field don't grasp

Status: Open.

#8 In deepcelllineage/mitolin;

· Deena-B opened on Jul 11, 2019

Align and visualize multiple (mitochondria) nucleotide sequence (.fasta) files

4-12 hoursThis task will probably take about 4-12 hoursThis task will probably take about 4-12 hours

good first issueGood for newcomersGood for newcomers

quirks of the fieldYou will learn things that most people outside the field don't graspYou will learn things that most people outside the field don't grasp

Status: Open.

#7 In deepcelllineage/mitolin;

· Deena-B opened on Jul 9, 2019

Create a "Panel of Normals"

>12 hoursThis task will probably take more than 12 hours to completeThis task will probably take more than 12 hours to complete

mentally challengingif you don't have experience with genomics, this concept will challenge the way you see thingsif you don't have experience with genomics, this concept will challenge the way you see things

quirks of the fieldYou will learn things that most people outside the field don't graspYou will learn things that most people outside the field don't grasp

Status: Open.

#6 In deepcelllineage/mitolin;

· Deena-B opened on Jul 1, 2019