To run the R analysis script within a Docker container with the necessary software environment, simply execute the run-scripts script from the root directory of this git repository on a system with docker installed. The analysis output will be placed in a time-stamped directory that begins with "work".
The docker image is available on dockerhub. Alternatively, you may request a tar file of the image from the maintainer of the Dockerfile, which can be loaded and then tagged using the "docker load" and "docker tag" commands.