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Bioc parallel#120

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jamespeapen merged 28 commits intohuishenlab:masterfrom
jamespeapen:biocParallel
Feb 23, 2026
Merged

Bioc parallel#120
jamespeapen merged 28 commits intohuishenlab:masterfrom
jamespeapen:biocParallel

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Use BiocParallel for parallel operations.
Add some functions to correctly handle thread requests considering nested parallelism.
Fixes #105.

@jamespeapen jamespeapen added this to the v2 milestone Nov 24, 2025
@jamespeapen jamespeapen self-assigned this Nov 24, 2025
@jamespeapen jamespeapen added the enhancement New feature or request label Nov 24, 2025
@jamespeapen jamespeapen force-pushed the biocParallel branch 2 times, most recently from f9f3778 to 4265090 Compare February 23, 2026 17:12
to consolidate parallelizations args before using biocParallel
pollutes progress info with too many bars
Its only slower than parallel when group = TRUE
@jamespeapen jamespeapen marked this pull request as ready for review February 23, 2026 21:18
@jamespeapen jamespeapen merged commit a54cce5 into huishenlab:master Feb 23, 2026
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@jamespeapen jamespeapen deleted the biocParallel branch February 23, 2026 21:22
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Reduce/configure logging verbosity

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