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hyperifyio / goagent Public

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Develop to main#1

Closed

thejhh wants to merge 1168 commits intomainhyperifyio/goagent:mainfrom

develophyperifyio/goagent:developCopy head branch name to clipboard

Conversation Commits1168 (1168)Checks Files changed

Closed

Develop to main#1
thejhh wants to merge 1168 commits intomainfrom
develop

Commits

This pull request is big! We're only showing the most recent 250 commits

Commits on Aug 18, 2025

Mark metadata_extract checklist item complete per DoD (build/tests/lint green; docs present).
aibuddy
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Add pdf_extract tool scaffold with size cap test and wiring
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Implement pdf_extract parsing and optional OCR hook
aibuddy
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docs(checklist): add README follow-author LinkedIn link task
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committed
Tool: pdf_extract — implement PDF text extraction with optional OCR, add tests and docs; wire manifest and Makefile; mark checklist done.
aibuddy
committed
Add skeleton for rss_fetch tool with tests
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Implement rss_fetch: HTTP fetch with conditional GET, RSS/Atom parsing, SSRF guard
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Wire rss_fetch into build and manifest; add docs
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Fix lint: handle Close/Copy errors and gofmt for rss_fetch
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Mark L17 rss_fetch done — DoD verified (build/tests/lint green); include minor errcheck-friendly stderr writes.
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Add wayback_lookup tool with SSRF guard, lookup/save behavior, tests, and build wiring.
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fix(wayback_lookup): retry GET on 5xx to reduce flakiness
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chore: add prebuilt rss_fetch binary artifact to repo
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Add failing tests for wiki_query tool (titles and search)
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Implement wiki_query tool with MediaWiki extracts/opensearch support
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Wire wiki_query into Makefile TOOLS and tools.json manifest
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Check off FEATURE_CHECKLIST wiki_query item after adding tool, tests, and wiring
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committed
Tool: openalex_search — implement scholarly works search with SSRF guard, retries, manifest + Makefile wiring, docs, and tests; fix lint in wiki_query and wayback_lookup.
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Check off FEATURE_CHECKLIST.md L20: openalex_search implemented with build/tests/lint green.
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docs: add rss_fetch cleanup and heading consolidation tasks
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Add crossref_search tool with tests and docs; wire into Makefile and tools.json. Completes FEATURE_CHECKLIST crossref_search item with SSRF guard, polite UA via CROSSREF_MAILTO, 429 rate limit hand…
aibuddy
committed
Tool: github_search — implement GitHub search (repos/code/issues/commits) with rate-limit surfacing, SSRF guard, retries; add tests; wire into Makefile and tools.json to expose capability.
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committed
TDD: add failing test and stub for dedupe_rank tool
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Tool: dedupe_rank — implement minimal Jaccard-based grouping with TF‑IDF representative; tests green; mark checklist L23 done.
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Tool: citation_pack — normalize citation and optional Wayback lookup; add tests, Makefile wiring, manifest entry, and reference docs. Completes FEATURE_CHECKLIST L24 with build/tests/lint green.
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wiki_query: remove top-level oneOf from tools.json and enforce mutual exclusivity at runtime; add validation tests.
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checklist: mark L25 done — wiki_query schema updated, runtime validation added, jq check passes, tests/lint green.
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Docs: add consolidated research tools reference and link from README; mark checklist item complete (rendered, lint/tests green).
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Docs: add research tools security posture and link from threat model
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Checklist: mark L27 done — research tools security posture doc added and linked; quality gates green
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Docs: add research pipeline diagram and link from ADR-0010 and docs index; mark checklist L28 complete.
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Runbook: add Troubleshooting research tools section covering envs, SSRF, 429/backoff, robots, truncation, and timeouts; mark checklist L29 complete. DoD: renders, lint/tests green.
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examples: add manual research tools README with copy-paste commands and env notes
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chore: mark Makefile tooling wiring as done after reproducible build check
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docs: add LinkedIn follow link to README and complete checklist item
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committed
cli: add -http-retries and -http-retry-backoff flags with env precedence and wire into OpenAI client; update help and add precedence tests per FEATURE_CHECKLIST L33 DoD.
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checklist: mark L33 complete — global HTTP retry knobs added, help updated, tests added per DoD.
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docs: expand FUTURE_CHECKLIST with sandbox tool plans and de-duplicate review heading
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committed
feat(cli,image): add -image-base-url and -image-api-key with inheritance and redaction; print-config shows redacted image.api_key; docs synced and tests added
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BLOCKED: L35 Add image model flag – missing cmd/agentcli and internal/tools/image in repo; added next step to locate/restore or retarget to tools/cmd/img_create.
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feat(cli,image): add image HTTP behavior flags (-image-http-timeout, -image-http-retries, -image-http-retry-backoff) with inheritance from chat; update help and print-config; add internal image cli…
aibuddy
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checklist: mark L37 complete — image HTTP timeout/retry/backoff flags added, help/docs synced, tests verify inheritance and client usage.
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feat(cli,image): add common image parameter flags and tests; sync help/docs; complete L38.
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docs(prompts): add default prep prompt
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docs(checklist): update FUTURE_CHECKLIST items
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docs(checklist): update FEATURE_CHECKLIST items
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BLOCKED L39: Image prompt file support cannot proceed: missing cmd/agentcli; recorded blocker and next step.
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BLOCKED: Mark L41 blocked due to missing cmd/agentcli; added next-step subtask; status-only change.
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BLOCKED: L43 -print-config cannot proceed: missing cmd/agentcli; added next-step to create minimal skeleton with print_config.go. Status-only change.
aibuddy
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agentcli: add -prep-temp and env overrides; env for -prep-top-p; one-knob behavior and print-config/help/docs updates
aibuddy
committed
checklist: mark pre-stage sampling knobs done (prep-temp, prep-top-p)
aibuddy
committed
internal/oai: add centralized resolution helpers for precedence/inheritance
aibuddy
committed
internal/cli,resolve: refactor HTTP retry knob resolution to use centralized helpers; align image HTTP knob inheritance with shared Resolve* semantics.
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chore(tests): satisfy linters — use t.Setenv in resolve tests; add nolint for gocyclo on image params test; gofmt -s applied
aibuddy
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chore(lint): gofmt -s resolve_test; maintainers-only change
aibuddy
committed
internal/oai: extend resolver tests for edge cases
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checklist: mark L50 precedence/inheritance helpers complete after green lint/tests
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docs: trim trailing blank line in FUTURE_CHECKLIST.md
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cmd/agentcli: add -image-model flag with env precedence; update help, print-config, and tests
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BLOCKED S02: print-config image.model — cmd/agentcli/main.go missing; added Next step.
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S03: add image.Options scaffold and unit test
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logs: update CURRENT_TASK.md
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BLOCKED S04: Marked plumb-model-to-options as blocked due to missing cmd/agentcli; status-only change.
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cmd/agentcli: extend messages save/load to support image_prompt metadata
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checklist: mark image_prompt save/load support as complete (L52)
aibuddy
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Mark API key redaction task as BLOCKED due to missing cmd/agentcli debug path; add next step to scaffold CLI before implementing masking.
aibuddy
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BLOCKED: capabilities backend summary cannot be implemented: missing cmd/agentcli; record next step and update CURRENT_TASK.md.
aibuddy
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checklist: mark docs update complete (L57)
aibuddy
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docs(README): rewrite and expand getting started and usage
aibuddy
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cmd/agentcli: add deterministic --help snapshot test and mark checklist item complete
aibuddy
committed

Commits on Aug 19, 2025

cmd/agentcli: add explicit parse errors for conflicting flags; add compat tests; mark L59 done in checklist
aibuddy
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examples(image): add README with same/split backend commands; Makefile: add smoke-image target. Marks checklist L60 done.
aibuddy
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BLOCKED: L61 pre-stage prompt flags — CLI missing; add Next subtask.
aibuddy
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internal/oai: add PrepConfig and JoinPrompts for pre-stage prompt concatenation
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checklist: mark L63 (pre-stage prompt concat) complete
aibuddy
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internal/oai: embed default smart prep prompt and test
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checklist: mark default smart prep prompt as complete
aibuddy
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prompts(prep_default): rewrite default Smart Prep prompt to Harmony messages JSON contract
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internal/oai: add ResolvePrepPrompt with tests; select pre-stage prompt from flags, files, or embedded default per DoD
aibuddy
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test(oai): clarify non-fatal shape hint log; format helper
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chore(logs): update current work item description
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prestage: add minimal runner to send resolved prompt as user message
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chore: update CURRENT_TASK to reflect L66 execution wiring focus
aibuddy
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checklist: mark L66 pre-stage prompt wiring complete; add errcheck on Encode and keep lints/tests green
aibuddy
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chore(logs): update CURRENT_TASK for L66 wiring completion
aibuddy
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prestage: define Harmony output contract and validator; add tests and docs
aibuddy
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checklist: mark L67 pre-stage contract/validator complete; link doc from README
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chore(logs): update CURRENT_TASK for L67 pre-stage contract/validator
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Implement prestage merge parser and merger (L68); add unit tests.\n\nImplements FEATURE_CHECKLIST L68 merge rules for system/developer and parses tool_config/image_instructions for future use.
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Check off L68: prestage merge implemented with parser and merge helpers; tests green.
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Implement -prep-dry-run merged output and pre-stage merge wiring.
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checklist: mark L69 (-prep-dry-run merged output) complete per DoD
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agentcli: include prestage metadata in message print/save outputs; maintain CURRENT_TASK
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agentcli: tests cover prestage metadata in -print-messages and saved wrapper
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checklist: mark prestage metadata extension complete (print/save wrappers)
aibuddy
committed
cmd/agentcli: add -prep-system and -prep-system-file flags with env fallbacks; include optional pre-stage system message in prep request; update help and sync CLI reference; add tests for exclusivi…
aibuddy
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checklist: mark L71 (-prep-system flags) complete after tests/lint green
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chore(logs): update CURRENT_TASK to L72 capability-map enforcement
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prestage: enforce one‑knob + add JSON mode support
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checklist: mark L72 (pre-stage capability-map enforcement) complete
aibuddy
committed
checklist: mark L73 blocked; add next-step
aibuddy
committed
checklist: mark L75 (-print-config prep section) BLOCKED; add next step to scaffold minimal cmd/agentcli for -print-config
aibuddy
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docs(logs): clarify CURRENT_TASK blocked item and next step
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BLOCKED: README pre-stage prompt overrides section — flags -prep-prompt/-prep-file absent in this repo; recorded next step to implement L61 or confirm flags.
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checklist: mark backward compatibility guard BLOCKED; add next step
aibuddy
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BLOCKED: Telemetry/verbosity alignment — CLI scaffold missing; added next action.
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ADR-0007: Pre-stage prompt overrides (flags + embedded default)
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docs(logs): update CURRENT_TASK for ADR-0007 drafting and verification
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Docs: add prestage flow Mermaid diagram and index link; mark checklist item done
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committed
cmd/agentcli: expand help snapshot assertions for repeatable flags, '-' STDIN, and exclusivity
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checklist: mark help snapshot test expansion as done; tests/lint green
aibuddy
committed
internal/tools/jsrun: add minimal code.sandbox.js.run handler with bounded output and tests
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checklist: mark code.sandbox.js.run handler implemented (tests green)
aibuddy
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jsrun: add goja VM with wall-time interrupt and TIMEOUT errors; add timeout unit test
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committed
fix: address lint issues in jsrun (errcheck, gofmt); tests and lint green
aibuddy
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jsrun: mark TIMEOUT/interrupt item complete in FEATURE_CHECKLIST.md
aibuddy
committed
Add hygiene audit items: img_create extras in tools.json schema; harmonize image HTTP timeout env precedence for img_create.
aibuddy
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jsrun: enforce deny-by-default via tests; mark checklist item complete
aibuddy
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docs(logs): mark CURRENT_TASK idle
aibuddy
committed
jsrun: structured error codes (EVAL_ERROR/OUTPUT_LIMIT/TIMEOUT) with tests; mark checklist item complete.
aibuddy
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Docs: add code.sandbox.js.run interface page and link from README.
aibuddy
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Check off docs item: add code.sandbox.js.run interface and README link.
aibuddy
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checklist: add SEARXNG_ALLOW_LOCAL, HTTP_FETCH_ALLOW_LOCAL, and fs_move stderr tasks
aibuddy
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internal/tools/jsrun: add observability audit for code.sandbox.js.run (tool name, span, wall_ms, bytes_out) and test.
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committed
code.sandbox.wasm.run: add input-validation skeleton and tests
aibuddy
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wasmrun[S01]: validate positive limits with tests
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docs(logs): update CURRENT_TASK for wasm.run positive-limits validation
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BLOCKED: code.sandbox.wasm.run – add embedded test module next.
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docs(logs): mark CURRENT_TASK blocked pending embedded wasm module
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wasmrun: deny WASI by default and add negative test; fix embed path
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BLOCKED: wasm runner memory limit task (L96) — execution engine not yet implemented; next: add wazero with mem_pages enforcement and embedded grow-over-cap test.
aibuddy
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wasmrun: add linear memory read helper with strict OOB checks and unit tests
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checklist: mark 'Host memory read correctness' done with helper + tests
aibuddy
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docs(logs): update CURRENT_TASK for wasm memory helper and OOB tests
aibuddy
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Block wasmrun structured errors & schema; add Next step.
aibuddy
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checklist: mark L101 BLOCKED and add Next step
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wasmrun: add observability audit lines with span tools.wasm.run and test
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checklist: mark L103 (wasmrun observability) done — tests+lint green
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docs(logs): update CURRENT_TASK — observability green; idle
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committed
internal/sandbox: introduce shared limits utilities (bounded buffer, timeout helper, JSON error)
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committed
docs(logs): update CURRENT_TASK — idle
aibuddy
committed
Docs(js sandbox): add Security Model, Pitfalls, and timeout example; checklist: note WASM doc as blocked sub-slice
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docs(logs): update CURRENT_TASK — JS sandbox security; WASM pending
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checklist: mark L105 complete (Security Model docs)
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cmd/agentcli: add -state-dir flag with env fallback, tilde expansion, and 0700 creation; update help, tests, and CLI reference; complete L107.
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docs(logs): update CURRENT_TASK — progress sync
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internal/state: define versioned StateBundle schema and validators; add ADR-0011
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checklist: mark L108 complete — state bundle schema and ADR in place
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docs(logs): update CURRENT_TASK — implement versioned state bundle schema and validators
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internal/state: add atomic SaveStateBundle with fsync and pointer update; tests ensure perms, atomicity, and dir fsync
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checklist: mark L109 complete — atomic SaveStateBundle with tests
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checklist: add security sandbox feature plan with tasks and DoD
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Implement LoadLatestStateBundle with strict validation and tests.
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Check off LoadLatestStateBundle item; tests and lint are green.
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internal/state: tighten atomic write error handling; refresh tests
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cmd/agentcli: add -state-scope flag and default hashing; update docs and tests
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checklist: mark -state-scope feature done; help/docs/tests updated and green
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prestage: add Coordinator with restore-before-prep behavior and tests
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checklist: mark restore-before-prep wiring as completed
aibuddy
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docs(logs): update CURRENT_TASK — focus on restore-before-prep wiring
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committed
agentcli: add -state-refine flags and validation; sync CLI docs
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checklist: mark L113 complete — refine flags and tests in place, gates green
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README: add jq prerequisite and Windows instructions for ripgrep and make; keep examples runnable across OSes.
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docs(logs): update CURRENT_TASK — progress sync
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state: add RefineStateBundle with deterministic append and prev_sha; tests ensure preservation, timestamp bump, and snapshot save
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checklist: mark L114 complete — RefineStateBundle implemented with tests and gates green
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prestage: enforce effective-source precedence and warn on refine+overrides
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checklist: mark L115 done (effective-source precedence + warning)
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state: harden persistence with secure dir checks and secret redaction
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checklist: mark state security hardening as done
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cli: add --dry-run to print state plan without writing; document in help, README, and CLI reference; mark checklist L117 done.
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test: fix errcheck in SaveStateBundle redaction test by checking ReadDir error
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chore: update CURRENT_TASK.md status for dry-run planning work
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style: normalize gofmt indentation across CLI and state
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test: add E2E state persistence scenario (save→restore→refine) and precedence checks; mark checklist item done
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docs(logs): sync CURRENT_TASK.md progress
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state: quarantine corrupt latest.json and snapshots; add tests; mark checklist item done.
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committed
docs(logs): sync CURRENT_TASK.md progress
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state: add coarse advisory file lock (state.lock) for save/load and concurrent save test; keep best-effort with 2s jittered wait; all tests green.
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checklist: mark concurrency & locking state.lock item done; tests ensure concurrent writers serialize without partial files.
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ADR-0012 and README: document -state-dir persistence and refinement; link in docs index; mark checklist item done.
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state(lock/load/save): fix errcheck and gofmt issues; handle lock file writes/cleanup errors and ignore best-effort chmod; inline unlock acquisition to keep linter happy.
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style(state): gofmt -s internal/state after errcheck updates
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docs(checklist): expand migration plan with sliced PRs and workflow steps
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logs: set idle CURRENT_TASK and record NOOP iteration
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checklists: reorder FEATURE_CHECKLIST and FUTURE_CHECKLIST deterministically
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checklist: mark S01 img-model default inject as BLOCKED (missing cmd/agentcli)
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docs(checklists): reorder FEATURE_CHECKLIST and FUTURE_CHECKLIST deterministically
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docs(changelog): record checklist reorg and future items move
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docs(checklists): consolidate future items into feature checklist; remove duplicated entries
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docs(rules): fine-tune .cursor/rules wording for clarity
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Docs: Linux 5.4 sandbox compatibility runbook and help link
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checklist: complete bootstrap/preflight
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workflow: mark PR #01 scaffold as BLOCKED
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chore(changelog,checklist): record PR slicing plan; keep develop limited to task files
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docs: mark PR #01 scaffold as OPEN in task docs
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docs: add PR #02 link under minimal CLI entrypoint
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docs(checklists): record existing open PRs and link PR #02; keep develop limited to task files
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docs(checklists): mark PR #09 docs/diagrams as OPEN with link; admin-only on develop
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docs(checklists): mark PR plan as OPEN (#6) and link docs/diagrams PR (#5); admin-only on develop
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docs(checklists): mark PR #03 as BLOCKED pending #01/#02; clarify minimal restore set
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docs: record PR #7 for OAI client/types in checklist+changelog
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chore: track PR #05 (model defaults & capability map) and sync task files
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chore: record PR #8 in checklist and changelog
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chore(checklist): record PR #07 tool runner link
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chore(logs): update CURRENT_TASK after opening PR #10
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docs(checklists): record OPEN PRs #09 tools manifest and #10 tool runner on develop only
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chore(checklist): record PR #10 (get_time) link in checklist and changelog on develop
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chore(checklist): record PR #12 quickstart in checklist and changelog
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docs(checklist,changelog): record opened PRs for exec and fs_read_file
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docs(checklist,changelog): add PR references for fs_* tools
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docs(checklist): note prepared clean workspace at ./work/main for feature branch slicing
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docs(checklist): record new PR #20 for fs_mkdirp on develop
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docs(checklist): record new PR #21 for fs_stat on develop
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docs(changelog): record opened PRs #20 (fs_mkdirp) and #21 (fs_stat) on develop
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docs(checklist): mark PR #07 tool runner BLOCKED pending manifest types (ToolSpec); record next action
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chore(logs): update CURRENT_TASK after blocking pr/07; focus pr/06 manifest types
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docs(checklist,changelog): record new OPEN PRs for fs_edit_range (#22), fs_read_lines (#23), and fs_search (#24) on develop only
aibuddy
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docs(checklist,changelog): record new OPEN PR for img_create (#26) on develop only
aibuddy
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docs(checklist,changelog): record new OPEN PR for http_fetch (#27) on develop only
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docs(checklist,changelog): record new OPEN PR for robots_check (#28) on develop only
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docs(checklist,changelog): record new OPEN PR for readability_extract (#29) on develop only
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docs(checklist,changelog): record new OPEN PR for metadata_extract (#30) on develop only
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docs(checklist,changelog): record new OPEN PR for rss_fetch (#31) on develop only
aibuddy
committed
docs(checklist,changelog): record new OPEN PR for wayback_lookup (#32) on develop only
aibuddy
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docs(checklist,changelog): record new OPEN PRs (#33-#40) on develop only
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chore(checklist,changelog): record PR #42 for scripts and CI utilities (develop-only admin update)
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docs(chore): track PR #43 in FEATURE_CHECKLIST and CHANGELOG; update status files only on develop
aibuddy
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chore: update checklist with open PR links (scripts, Makefile, security & runbooks)
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chore: record ADR-0002 PR link in checklist
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chore(checklist): track integration tests PR and set current task
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docs(checklist): track ADR-0011/0012 PRs
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docs(checklists): record ADR-0011 PR as OPEN (#48) on develop only
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docs(checklists): record ADR-0012 PR as OPEN (#49) on develop only
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docs(checklist): mark core tests slice BLOCKED; record next action
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docs(checklist): record OPEN PR #50 for state schema slice (develop-only admin)
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docs(changelog): record OPEN PR #50 for state schema slice (develop-only admin)
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docs(admin): record OPEN PRs #50 (schema) and #51 (save/load) in checklist and changelog (develop-only)
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chore(tasks): refresh PR inventory note in checklist only
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chore(tasks): link existing diagrams PR in checklist
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docs(checklist): maintenance note — verified open PRs and refreshed clean workspace at ./work/main (develop-only)
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chore: update feature checklist after PR inventory and work/main sync
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docs(checklist,changelog): record OPEN PR #52 Sandbox limits utilities (develop-only admin update)
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chore(tasks): refresh PR inventory; reset ./work/main to origin/main (develop-only admin)
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chore(tasks): refresh PR inventory; re-sync ./work/main to origin/main (develop-only admin)
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docs: update FEATURE_CHECKLIST with refreshed PR inventory and synced work/main
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chore(tasks): refresh PR inventory; log idle status (develop-only admin)
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chore(task): update FEATURE_CHECKLIST with docs-cli-reference branch prep
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chore(tasks): record OPEN PR #55 (CLI reference) on develop-only admin files
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docs(tasks): CURRENT_TASK — opened PR #55; preparing next docs-only slice
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