Update build_consensus_reference.py to prevent the AssertionError#7
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noranekonobokkusu wants to merge 1 commit intoimmunogenomics:mainfrom
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Update build_consensus_reference.py to prevent the AssertionError#7noranekonobokkusu wants to merge 1 commit intoimmunogenomics:mainfrom
noranekonobokkusu wants to merge 1 commit intoimmunogenomics:mainfrom
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The update prevents the AssertionError which is triggered when the largest identified consensus cluster is smaller than the original number of cNMF runs.
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When the largest identified cluster in
clus_dict_allis smaller than the total number of individual cNMF results (self.num_results),pd.DataFrame.from_dictcauses the assertion error, e.g.Traceback (most recent call last): File “/home/unix/safina/.conda/envs/cnmf/lib/python3.10/site-packages/pandas/core/internals/construction.py”, line 939, in _finalize_columns_and_data columns = _validate_or_indexify_columns(contents, columns) File “/home/unix/safina/.conda/envs/cnmf/lib/python3.10/site-packages/pandas/core/internals/construction.py”, line 986, in _validate_or_indexify_columns raise AssertionError( AssertionError: 6 columns passed, passed data had 4 columnswhich occurs because the largest identified consensus program consists of four individual programs from a total of six independent cNMF runs. Replacing
self.num_resultswith the size of the largest cluster solves the issue.