Skip to content

Comments

Use SRA FTP server instead of HTTP#15

Open
camillescott wants to merge 2 commits intojohnsolk:masterfrom
camillescott:ncbi-ftp
Open

Use SRA FTP server instead of HTTP#15
camillescott wants to merge 2 commits intojohnsolk:masterfrom
camillescott:ncbi-ftp

Conversation

@camillescott
Copy link

Switches getdata.py to use the SRA's FTP server. Adds a new function to munge the URLs taken from SraRunInfo.csv. Additionally, isolates the executed code into a main function with an argument parser, with the defaults set the same as the previously hardcoded values.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant