[pre-commit.ci] pre-commit autoupdate

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 -   repo: https://github.com/asottile/reorder-python-imports
-    rev: v3.12.0
+    rev: v3.16.0
     hooks:
     -   id: reorder-python-imports
         args: ["--py38-plus"]
@@ -14,17 +14,17 @@ repos:
         exclude: ^docs/
 
 -   repo: https://github.com/asottile/add-trailing-comma
-    rev: v3.2.0
+    rev: v4.0.0
     hooks:
     -   id: add-trailing-comma
 
 -   repo: https://github.com/asottile/pyupgrade
-    rev: v3.20.0
+    rev: v3.21.2
     hooks:
     -   id: pyupgrade
 
--   repo: https://github.com/psf/black
-    rev: 23.12.1
+-   repo: https://github.com/psf/black-pre-commit-mirror
+    rev: 26.1.0
     hooks:
     -   id: black
         args: ["--safe", "-l120"]

geneplexus/__init__.py

@@ -124,6 +124,5 @@
 from . import util
 from .geneplexus import GenePlexus
 
-
 __version__ = "3.0.0"
 __all__ = ["download", "GenePlexus", "util", "config"]

geneplexus/_config/__init__.py

@@ -1,4 +1,5 @@
 """Basic configurations."""
+
 from . import config
 from .logger_util import make_logger
 

geneplexus/_config/config.py

@@ -1,4 +1,5 @@
 """Global variables used by the GenePlexus library."""
+
 import os.path as osp
 import pathlib
 from typing import Any

geneplexus/_config/logger_util.py

@@ -1,4 +1,5 @@
 """Logger utilities."""
+
 import logging
 from contextlib import contextmanager
 from typing import Optional

geneplexus/cli.py

@@ -1,4 +1,5 @@
 """Command line interface for the GenePlexus pipeline."""
+
 import argparse
 import atexit
 import json

geneplexus/download.py

@@ -1,4 +1,5 @@
 """Data download module."""
+
 import io
 import os
 import os.path as osp

geneplexus/geneplexus.py

@@ -1,4 +1,5 @@
 """GenePlexus API."""
+
 import os
 import os.path as osp
 import tempfile

geneplexus/util.py

@@ -1,4 +1,5 @@
 """Utilities including file and path handling."""
+
 import functools
 import json
 import os