GitHub - lch14forever/NGS_scripts: Scripts for NGS analysis

Name		Name	Last commit message	Last commit date
Latest commit History 25 Commits
nanopore		nanopore
ploting		ploting
.gitignore		.gitignore
amphoraPep2DNA.sh		amphoraPep2DNA.sh
bsub-template.sh		bsub-template.sh
errorRateFromBAM.py		errorRateFromBAM.py
extract_subseq.py		extract_subseq.py
filter_best_match.py		filter_best_match.py
filter_tax.r		filter_tax.r
merge_fastqs.sh		merge_fastqs.sh
merge_tables.r		merge_tables.r
monitor_job.sh		monitor_job.sh
realign.sh		realign.sh
rm_tmp.sh		rm_tmp.sh
rowmean.py		rowmean.py
run-lofreq.sh		run-lofreq.sh
run_decont.sh		run_decont.sh
run_gatk.sh		run_gatk.sh
run_job.sh		run_job.sh
run_metaphlan2.sh		run_metaphlan2.sh
run_wilcox.r		run_wilcox.r
select_col.py		select_col.py
select_fasta.py		select_fasta.py
select_row.py		select_row.py
seq_length.sh		seq_length.sh
shuf_fq.sh		shuf_fq.sh
split_metaphlan_table.sh		split_metaphlan_table.sh
submit_to_sge.py		submit_to_sge.py
to2lineFasta.sh		to2lineFasta.sh

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