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  1. MARS MARS Public

    MARS: improving Multiple circular sequence Alignment using Refined Sequences

    C++ 31 10

  2. CNEFinder CNEFinder Public

    CNEFinder: Finding Conserved Non-coding Elements in Genomes

    C++ 25 15

  3. BDA-index BDA-index Public

    Text Indexing for Long Patterns

    C++ 4

  4. SMART SMART Public

    SMART: Supermaximal Approximate Repeats Tool

    C++ 4

  5. SSA SSA Public

    Computes the sparse suffix and LCP array.

    C++ 1

  6. Seedability Seedability Public

    Seedability: A tool to determine parameters t (shared number of seeds) and k (seed length) between a set of reads or between a reference and set of reads.

    Roff 2