GitHub - mcvickerlab/WASP2: Allele-specific pipeline for unbiased read mapping(WIP), QTL discovery(WIP), and allelic-imbalance analysis

Quick Start

pip install wasp2

wasp2-count count-variants reads.bam variants.vcf.gz -s sample1

If you use WASP2 in your research, please cite our paper (coming soon).

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