LungHistoNet

LungHistoNet is a deep learning project that utilizes Vision Transformers to analyze lung histology images. The goal is to enhance the detection and classification of pulmonary diseases through advanced AI techniques.

website

TODO

• Fix/optimize the real-time plot request in the application.

MAC

Step 1: Create Docker Account

1. Create an account at Docker Hub and set up a password.

Step 2: Download and Install Docker

1. Download Docker from Docker.
   • If using an M1/M2 Mac, select the Apple Core version.
   • If using an Intel Mac, select the Intel Core version.
2. Install the application.

Step 3: Login and Pull the Application

1. Open Terminal.
2. Login to Docker using your Docker Hub credentials:

   docker login

   Follow the instructions to log in (ensure you verify your email to log in successfully).
3. Pull the application by running the following command:

   docker pull amirhosseinebrahimi/lung-injury:latset_v1.6

Step 4: Install Brew

1. Check if Brew is installed. If not, open Terminal and run:

   /bin/bash -c "$(curl –fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)"

2. Set up Brew by running the following commands (replace XXX with your laptop username):

   echo >> /Users/XXX/.zprofile
   echo 'eval "$(/opt/homebrew/bin/brew shellenv)"' >> /Users/XXX/.zprofile
   eval "$(/opt/homebrew/bin/brew shellenv)"

Step 5: Install socat

1. Install socat using Brew:

   brew install socat

Step 6: Set Up Display for the Application

1. Open Terminal and set up the display (leave the Terminal open after pressing Enter):

• MacOS

  socat TCP-LISTEN:6000,reuseaddr,fork UNIX-CLIENT:"$DISPLAY"

• Linux (debian)

  sudo xhost +local:docker

2. Open another Terminal and run the following command (replace XXX with your laptop username):

• MacOS

  docker run -it --rm -e DISPLAY=host.docker.internal:0 \
  amirhosseinebrahimi/lung-injury:latest_v1.6

• Linux (debian)

  sudo docker run -it --rm   -e DISPLAY=$DISPLAY  \
  -v /tmp/.X11-unix:/tmp/.X11-unix   \
  amirhosseinebrahimi/lung-injury:latest_v1.6