sequence_qc

Package for doing various ad-hoc quality control steps from MSK-ACCESS generated FASTQ or BAM files

Installation

From pypi:

pip install sequence_qc

From conda:

conda install -c ionox0 -c conda-forge -c bioconda sequence-qc

Name		Name	Last commit message	Last commit date
Latest commit History 282 Commits
.github		.github
docs		docs
sequence_qc		sequence_qc
tests		tests
.editorconfig		.editorconfig
.gitbook.yaml		.gitbook.yaml
.gitignore		.gitignore
.travis.yml		.travis.yml
AUTHORS.rst		AUTHORS.rst
CONTRIBUTING.rst		CONTRIBUTING.rst
Dockerfile		Dockerfile
HISTORY.rst		HISTORY.rst
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
environment.yaml		environment.yaml
requirements.txt		requirements.txt
requirements_dev.txt		requirements_dev.txt
setup.cfg		setup.cfg
setup.py		setup.py
tox.ini		tox.ini