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Pull requests: nf-core/scrnaseq

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Pull requests list

feat(cellranger/count): support SRA three-file FASTQ inputs (_1/_2/_3) in renaming logic enhancement New feature or request
#532 opened Mar 13, 2026 by emrunali Loading…
1
2
Add velocyto from bam for cellranger
#530 opened Mar 12, 2026 by agalitsyna Loading…
10 of 11 tasks
1
Replace alevinqc with qcatch for simpleaf QC
#520 opened Feb 14, 2026 by an-altosian Loading…
11 tasks
24
Increase default runtime limit for cellbender
#505 opened Nov 12, 2025 by aednv Loading…
4 tasks done
STAR: Add support for no/multiple whitelist files enhancement New feature or request
#488 opened Aug 4, 2025 by LeonHafner Loading…
@LeonHafner
1
SmartSeq - Bugfixes
#486 opened Aug 1, 2025 by sminot Loading…
1 of 5 tasks
6
Use bioconductor-anndatar v1.0.0
#472 opened Jun 23, 2025 by lazappi Loading…
1 of 11 tasks
17
Add support for using GFF instead of GTF enhancement New feature or request
#451 opened Mar 21, 2025 by milos7250 Loading…
8 of 11 tasks
@milos7250
2
Added VDJ concatenation modules and added MuData object
#435 opened Feb 27, 2025 by saraterzo Loading…
6 of 11 tasks
4.1.0
29
Altos auto detection chemistry modules
#391 opened Nov 4, 2024 by wzheng0520 • Draft
11 tasks
4.1.0
4
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