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pancy's first pull request #1

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21f90e2
commit to my fork
pancypang Sep 9, 2023
8b7195d
commit
pancypang Sep 11, 2023
f5ff19a
commit again
pancypang Sep 11, 2023
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22 changes: 22 additions & 0 deletions spm_funcs.py
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Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,10 @@
%run spm_funcs.py
"""





import numpy as np

import nibabel as nib
Expand All @@ -42,8 +46,23 @@ def spm_global(vol):


def get_spm_globals(fname):

img = nib.load(fname)

data = img.get_fdata()

spm_vals = []

for k in range (data.shape[-1]):
vol = data[...,k]
spm_vals.append(spm_global(vol))
return spm_vals


""" Calculate SPM global metrics for volumes in image filename `fname`



Parameters
----------
fname : str
Expand All @@ -54,6 +73,9 @@ def get_spm_globals(fname):
spm_vals : array
SPM global metric for each 3D volume in the 4D image.
"""



# +++your code here+++
# return

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