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test command: also print image id #51

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Merged
joshmoore merged 2 commits into from
Jan 21, 2021
Merged

test command: also print image id #51

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1c608e9
test command: also print image id
dominikl Jan 11, 2021
37c8935
Improve output of test command
dominikl Jan 11, 2021
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15 changes: 9 additions & 6 deletions src/omero_cli_render.py
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Original file line number Diff line number Diff line change
Expand Up @@ -141,8 +141,8 @@
Image is assumed if <object>: is omitted

Output:
<Status>: <Pixels ID> <Time (in sec) to load the thumbnail> \
<Error details, if any>
<Status>: Pixels:<Pixels ID> Image:<Image ID> <Time (in sec) \
to load the thumbnail> <Error details, if any>

Where status is either ok, miss, fill, cancel, or fail.

Expand Down Expand Up @@ -752,10 +752,10 @@ def test(self, args):
""" Implements the 'test' command """
self.gateway.SERVICE_OPTS.setOmeroGroup('-1')
for img in self.render_images(self.gateway, args.object, batch=1):
self.test_per_pixel(
self.client, img.getPrimaryPixels().id, args.force, args.thumb)
self.test_per_image(
self.client, img, args.force, args.thumb)

def test_per_pixel(self, client, pixid, force, thumb):
def test_per_image(self, client, img, force, thumb):
ctx = {'omero.group': '-1'}
fail = {"omero.pixeldata.fail_if_missing": "true"}
fail.update(ctx)
Expand All @@ -766,6 +766,8 @@ def test_per_pixel(self, client, pixid, force, thumb):
error = ""
rps = client.sf.createRawPixelsStore()

pixid = img.getPrimaryPixels().id

try:
rps.setPixelsId(long(pixid), False, fail)
msg = "ok:"
Expand Down Expand Up @@ -799,7 +801,8 @@ def test_per_pixel(self, client, pixid, force, thumb):
tb.close()

stop = time.time()
self.ctx.out("%s %s %s %s" % (msg, pixid, stop-start, error))
self.ctx.out("%s Pixels:%s Image:%s %s %s" %
(msg, pixid, img.id, stop-start, error))
return msg


Expand Down