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Spreadsheet extraction functionality.#288

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Thomas-Rowlands wants to merge 167 commits intospreadsheet_extractionfrom
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Closed

Spreadsheet extraction functionality.#288
Thomas-Rowlands wants to merge 167 commits intospreadsheet_extractionfrom
main

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@Thomas-Rowlands
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Description

Implements spreadsheet extraction functionality.

Type of change

  • Documentation (non-breaking change that adds or improves the documentation)
  • New feature (non-breaking change which adds functionality)
  • Optimization (non-breaking, back-end change that speeds up the code)
  • Bug fix (non-breaking change which fixes an issue)
  • Breaking change (whatever its nature)

Key checklist

  • All tests pass (eg. pytest)
  • The documentation builds and looks OK (eg. mkdocs)
  • Pre-commit hooks run successfully (eg. pre-commit run --all-files)

Further checks

  • Code is commented, particularly in hard-to-understand areas
  • Tests added or an issue has been opened to tackle that in the future. (Indicate issue here: # (issue))

Thomas-Rowlands and others added 30 commits March 25, 2025 13:16
Co-authored-by: Adrian D'Alessandro <a.dalessandro@imperial.ac.uk>
Regression test corrected for word extraction.
Removed unwanted bioc attribute "version" from ac_bioc module, it doesn't align with our key file.
AdrianDAlessandro and others added 29 commits June 2, 2025 13:10
Co-authored-by: Alex Dewar <alexdewar@users.noreply.github.com>
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.11.11 → v0.11.12](astral-sh/ruff-pre-commit@v0.11.11...v0.11.12)
- [github.com/pre-commit/mirrors-mypy: v1.15.0 → v1.16.0](pre-commit/mirrors-mypy@v1.15.0...v1.16.0)
…ecorator for cleaner code and adjusted tests for their use.
Word test additions and old .doc document conversion
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3 participants