update recreate branch with updated restvv#21

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Peter-J-Freeman wants to merge 371 commits intore-create2from

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Commits on Apr 12, 2022

Merge pull request #73 from openvar/develop_2_0
Peter J. Freeman
authored

Commits on Apr 19, 2022

In response to https://github.com/openvar/rest_variantValidator/issues/75, some requirements have been assigned a fix build in requirements.txt.
Peter Causey-Freeman
committed
Merge pull request #77 from openvar/develop_2_0
Peter J. Freeman
authored

Commits on Apr 29, 2022

periodic update to add new 2002_02 database info
Peter Causey-Freeman
committed

Commits on May 17, 2022

Merge pull request #78 from openvar/develop_2_0
Peter J. Freeman
authored
Fix up docker install for new version 2.1.0
Peter Causey-Freeman
committed
Merge pull request #79 from openvar/develop_2_0
Peter J. Freeman
authored

Commits on Oct 14, 2022

see if this fixes https://github.com/openvar/variantValidator/issues/430 because this is really weird. For some reason the live server thinks a SeqObject is passed in the dict not string
Peter Causey-Freeman
committed

Commits on Nov 24, 2022

Merge pull request #82 from openvar/develop_2_0
Peter J. Freeman
authored

Commits on Nov 25, 2022

Fix setup.py

e05374pc
authored and
e05374pc
committed
Merge pull request #83 from openvar/v3.2.0
Peter J. Freeman
authored
Merge pull request #84 from openvar/develop
Peter J. Freeman
authored
Update to flask_restx and update REQUIREMENTS.txt

e05374pc
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e05374pc
committed
Merge pull request #85 from openvar/v3.2.0
Peter J. Freeman
authored
Merge branch 'master' into develop
Peter J. Freeman
authored
Merge pull request #86 from openvar/develop
Peter J. Freeman
authored
Update db installations and docker.md for new version. Also switch to flask-restx and Python 10

e05374pc
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e05374pc
committed
Switch default MySQL chipset

e05374pc
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e05374pc
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Update docker.md with arm/intel instructions

e05374pc
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e05374pc
committed

Commits on Dec 7, 2022

Merge pull request #87 from openvar/v3.2.0
Peter J. Freeman
authored

Commits on Jan 4, 2023

update copyright statement for 2023
e05374pc
committed
Merge pull request #88 from openvar/development
Peter J. Freeman
authored
Merge pull request #89 from openvar/master
Peter J. Freeman
authored
Merge pull request #90 from openvar/develop
Peter J. Freeman
authored

Commits on Apr 18, 2023

Update to use select_transcripts = raw field

e05374pc
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e05374pc
committed
Merge pull request #92 from openvar/development
Peter J. Freeman
authored

Commits on Apr 19, 2023

Update vdb docker to FROM mysql:5.7-debian

e05374pc
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e05374pc
committed
Merge pull request #93 from openvar/development
Peter J. Freeman
authored
Update docker install instructions

e05374pc
authored and
e05374pc
committed
Merge pull request #94 from openvar/development
Peter J. Freeman
authored

Commits on Apr 28, 2023

Add in code changes to make the genes2transcripts v2 work
Peter-J-Freeman
committed
Merge pull request #97 from openvar/development
Peter J. Freeman
authored

Commits on May 3, 2023

Commits on May 10, 2023

Update DOCKER.md
leicray
authored

Commits on May 12, 2023

Commits on May 16, 2023

Update ports for more guniorn options
Peter-J-Freeman
committed
Merge pull request #98 from openvar/development2
Peter J. Freeman
authored

Commits on May 17, 2023

set postgres to 12 for use on Pi
Peter-J-Freeman
committed

Commits on May 24, 2023

Merge branch 'master' into development
Peter J. Freeman
authored
Merge pull request #99 from openvar/development
Peter J. Freeman
authored
Migrate to postgres 14
Peter-J-Freeman
committed
Merge pull request #100 from openvar/development3
Peter J. Freeman
authored
Merge pull request #101 from openvar/development
Peter J. Freeman
authored

Commits on Jun 6, 2023

A few docker tweaks that make logging work correctly
Peter-J-Freeman
committed
Merge pull request #102 from openvar/development
Peter J. Freeman
authored

Commits on Jun 14, 2023

Freeze requirements
Peter-J-Freeman
committed
Merge pull request #103 from openvar/development
Peter J. Freeman
authored

Commits on Jun 15, 2023

Commits on Aug 3, 2023

Commits on Aug 7, 2023

Add timeout setting for gunicorn
Peter-J-Freeman
committed
Merge pull request #109 from openvar/development4
Peter J. Freeman
authored
Merge pull request #110 from openvar/development
Peter J. Freeman
authored

Commits on Aug 11, 2023

Create batch genes2transcripts for v2 endpoint
Peter-J-Freeman
committed
Merge pull request #111 from openvar/development4
Peter J. Freeman
authored
Merge pull request #112 from openvar/development
Peter J. Freeman
authored

Commits on Aug 15, 2023

Restructure and tweak for Aug 2023 release
Peter-J-Freeman
committed

Commits on Aug 17, 2023

Pre push
Peter-J-Freeman
committed

Commits on Aug 18, 2023

Add testing
Peter-J-Freeman
committed

Commits on Aug 29, 2023

update docker for new version using toml
Peter-J-Freeman
committed
Merge pull request #114 from openvar/development4
Peter J. Freeman
authored
Merge pull request #115 from openvar/development
Peter J. Freeman
authored

Commits on Aug 31, 2023

Set Python requirement to >=3.6
Peter-J-Freeman
committed
Merge pull request #116 from openvar/development4
Peter J. Freeman
authored
Merge pull request #117 from openvar/development
Peter J. Freeman
authored

Commits on Sep 26, 2023

Update Docker process
Peter-J-Freeman
committed

Commits on Oct 13, 2023

Merge pull request #118 from openvar/development4
Peter J. Freeman
authored

Commits on Oct 26, 2023

Commits on Oct 27, 2023

update docker mounts
Peter-J-Freeman
committed
Merge pull request #126 from openvar/development4
Peter J. Freeman
authored
Merge pull request #127 from openvar/development
Peter J. Freeman
authored
update docker mounts
Peter-J-Freeman
committed
Merge pull request #128 from openvar/development4
Peter J. Freeman
authored
Merge pull request #129 from openvar/development
Peter J. Freeman
authored

Commits on Nov 7, 2023

Commits on Nov 9, 2023

Create connection pool to speed up response times without sharing objects
Peter-J-Freeman
committed
Merge pull request #133 from openvar/development4
Peter J. Freeman
authored
Merge pull request #135 from openvar/development4
Peter J. Freeman
authored

Commits on Nov 10, 2023

Create connection pool to speed up response times without sharing objects
Peter-J-Freeman
committed
Merge pull request #136 from openvar/development4
Peter J. Freeman
authored
create gene2trans object
Peter-J-Freeman
committed
Merge pull request #137 from openvar/development4
Peter J. Freeman
authored
create gene2trans object
Peter-J-Freeman
committed
Merge pull request #138 from openvar/development4
Peter J. Freeman
authored
create gene2trans object
Peter-J-Freeman
committed
create gene2trans object
Peter-J-Freeman
committed
Merge pull request #139 from openvar/development4
Peter J. Freeman
authored
update object pool
Peter-J-Freeman
committed
Merge pull request #140 from openvar/development4
Peter J. Freeman
authored
update object pool
Peter-J-Freeman
committed
Merge pull request #141 from openvar/development4
Peter J. Freeman
authored
create gene2trans object to have max pool size and pool replenishing
Peter-J-Freeman
committed
Merge pull request #142 from openvar/development4
Peter J. Freeman
authored
update locust and correct VF endpoint error
Peter-J-Freeman
committed
Merge pull request #143 from openvar/development4
Peter J. Freeman
authored

Commits on Nov 13, 2023

update locust and correct VF endpoint error
Peter-J-Freeman
committed

Commits on Nov 15, 2023

Add develpment mode into the docker build and update the manual
Peter-J-Freeman
committed
Merge pull request #144 from openvar/development4
Peter J. Freeman
authored
Merge branch 'master' into development
Peter J. Freeman
authored
Merge pull request #134 from openvar/development
Peter J. Freeman
authored
Add badging for codecov
Peter-J-Freeman
committed
Merge pull request #145 from openvar/development4
Peter J. Freeman
authored
Merge pull request #146 from openvar/development
Peter J. Freeman
authored
Update locust file
Peter-J-Freeman
committed
Add wsgi test
Peter-J-Freeman
committed
Merge pull request #147 from openvar/development4
Peter J. Freeman
authored
Merge pull request #148 from openvar/development
Peter J. Freeman
authored

Commits on Nov 16, 2023

Increase MySQL docker connections
Peter-J-Freeman
committed
Merge pull request #149 from openvar/development4
Peter J. Freeman
authored
Merge pull request #150 from openvar/development
Peter J. Freeman
authored

Commits on Dec 6, 2023

Commits on Dec 7, 2023

Update CI script with correct volume naming
Peter-J-Freeman
committed

Commits on Dec 8, 2023

Commits on Dec 12, 2023

Commits on Jan 10, 2024

Merge pull request #164 from openvar/jfw_auth
Peter-J-Freeman
authored

Commits on Jan 18, 2024

Commits on Feb 1, 2024

Commits on Feb 2, 2024

Commits on Feb 16, 2024

Commits on Feb 20, 2024

Merge pull request #171 from openvar/development4
Peter-J-Freeman
authored

Commits on Feb 21, 2024

Commits on Mar 15, 2024

add rate limiting
Peter-J-Freeman
committed

Commits on Apr 16, 2024

Commits on Apr 17, 2024

Commits on May 1, 2024

Commits on May 3, 2024

fixed the endpoint tests
Peter-J-Freeman
committed

Commits on Jun 12, 2024

Commits on Jul 8, 2024

Commits on Jul 10, 2024

Commits on Jul 11, 2024

Commits on Jul 22, 2024

Merge pull request #181 from openvar/jfw_limit_test
Peter-J-Freeman
authored

Commits on Nov 15, 2024

Commits on Mar 11, 2025

push new docker build for validator 3.0.0
Peter-J-Freeman
committed

Commits on Apr 9, 2025

Commits on Apr 14, 2025

Commits on Apr 28, 2025

Commits on May 8, 2025

Commits on Jun 9, 2025

Commits on Jun 16, 2025

Merge pull request #197 from openvar/develop_3.0.0
Peter-J-Freeman
authored

Commits on Jul 17, 2025

Tweaks to new env setup
Peter-J-Freeman
committed

Commits on Jul 22, 2025

Merge pull request #198 from openvar/develop_3.0.0
Peter-J-Freeman
authored

Commits on Aug 6, 2025

Commits on Aug 15, 2025

Merge pull request #202 from Genomenon/flask-env-vars
John-F-Wagstaff
authored

Commits on Sep 10, 2025

Add tests for curl requests into swarms
Peter-J-Freeman
committed

Commits on Sep 11, 2025

Merge pull request #203 from openvar/curls
Peter-J-Freeman
authored

Commits on Oct 8, 2025

update ini
Peter-J-Freeman
committed

Commits on Oct 14, 2025

Commits on Oct 16, 2025

Commits on Oct 20, 2025

Make API call trailing slash agnostic
Peter-J-Freeman
committed

Commits on Oct 23, 2025

Develop new code for dynamic limiing to improve performance
Peter-J-Freeman
committed

Commits on Nov 4, 2025

Commits on Dec 10, 2025

Merge branch 'master' into dynamic_limiting
Peter-J-Freeman
authored

Commits on Dec 18, 2025

Merge pull request #207 from openvar/dynamic_limiting
Peter-J-Freeman
authored