CMO Cell-Free DNA (cfDNA) Informatics Team

Type: All

Visibility: All

Sort by: Most downloads

30 packages

gatk
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

157k
gbcms
Published May 26, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/GetBaseCountsMultiSample

48.9k
fgbio
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

45.5k
biometrics
Published Mar 26, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/biometrics

36k
bedtools
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

14.4k
sequence_qc
Published Apr 19, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team

10.1k
postprocessing_variant_calls
Published May 24, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/postprocessing_variant_calls

8.59k
abra2
Published Jan 26, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team

6.96k
bwa
Published Jan 26, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team

6.81k
fastp
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

5.11k
mosdepth
Published Mar 4, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

4.92k
fgbio_postprocessing
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

4.32k
cci_utils
Published May 27, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

3.95k
multiqc
Published May 19, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/MultiQC

2.8k
genotype_variants
Published Jan 16, 2024 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/genotype_variants

2.49k
access_utils
Published Jun 4, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/access_utils

1.34k
vcf2maf
Published Mar 8, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

866
genomenexus
Published Mar 18, 2024 by CMO Cell-Free DNA (cfDNA) Informatics Team

702
genomenexus_annotation-pipeline
Published Mar 19, 2024 by CMO Cell-Free DNA (cfDNA) Informatics Team

617
athena
Published Jun 1, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/athena

612
bcftools
Published Apr 25, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

423
vardictjava
Published Nov 4, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team

405
mutect1
Published Dec 20, 2023 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/mutect1

347
delly
Published Apr 15, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

342
waltz
Published Dec 12, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

323
samtools
Published Apr 25, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

319
merge_fastq
Published Mar 25, 2025 by CMO Cell-Free DNA (cfDNA) Informatics Team

310
msisensor-ct
Published Sep 26, 2023 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/msisensor-ct

253
oncokbannotator
Published Nov 17, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

220
snpsift
Published Oct 3, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

209