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SPARQLQueries Examples

Queries for the PlantMetWiki SNORQL UI (SPARQL Explorer) automated loading .

Relevant prefixes from this knowledge graph:

PREFIX biopax:      <http://www.biopax.org/release/biopax-level3.owl#>
PREFIX cito:        <http://purl.org/spar/cito/>
PREFIX dc:          <http://purl.org/dc/elements/1.1/>
PREFIX dcterms:     <http://purl.org/dc/terms/>
PREFIX foaf:        <http://xmlns.com/foaf/0.1/>
PREFIX freq:        <http://purl.org/cld/freq/>
PREFIX gpml:        <http://vocabularies.wikipathways.org/gpml#>
PREFIX owl:         <http://www.w3.org/2002/07/owl#>
PREFIX pav:         <http://purl.org/pav/>
PREFIX prov:        <http://www.w3.org/ns/prov#>
PREFIX rdf:         <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:        <http://www.w3.org/2000/01/rdf-schema#>
PREFIX skos:        <http://www.w3.org/2004/02/skos/core#>
PREFIX void:        <http://rdfs.org/ns/void#>
PREFIX wp:          <http://vocabularies.wikipathways.org/wp#>
PREFIX wprdf:       <http://rdf.wikipathways.org/>
PREFIX xsd:         <http://www.w3.org/2001/XMLSchema#>
PREFIX pmw:         <http://rdf-plantmetwiki.bioinformatics.nl/pathways/>
PREFIX ncbi:        <http://purl.obolibrary.org/obo/NCBITaxon_>
PREFIX ro:          <http://purl.obolibrary.org/obo/RO_>
PREFIX bioregistry: <https://bioregistry.io/mibig:>

Commonly used prefixes for federated queries:

  • Wikidata
PREFIX wd:          <http://www.wikidata.org/entity/>
PREFIX wdt:         <http://www.wikidata.org/prop/direct/>
PREFIX p:           <http://www.wikidata.org/prop/>
PREFIX pq:          <http://www.wikidata.org/prop/qualifier/>
PREFIX wdtn: <http://www.wikidata.org/prop/direct-normalized/> 
  • Lotus
#tba

License

GNU GENERAL PUBLIC LICENSE

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Example SPARQL queries for Plant WikiPathways

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