Release 0.2.5

.github/workflows/python-publish.yml

@@ -14,9 +14,9 @@ jobs:
     permissions:
       id-token: write
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
     - name: Set up Python
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: '3.x'
     - name: Install dependencies

.github/workflows/run-pytest.yml

@@ -9,14 +9,14 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        python-version: ["3.8", "3.11"]
+        python-version: ["3.10", "3.13"]
         os: [ubuntu-latest]
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v6
 
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}
 

eido/_version.py

@@ -1 +1 @@
-__version__ = "0.2.4"
+__version__ = "0.2.5"

eido/conversion.py

@@ -7,7 +7,6 @@
 import inspect
 from logging import getLogger
 import os
-from typing import NoReturn
 
 from .exceptions import *
 
@@ -107,7 +106,7 @@ def run_filter(prj, filter_name, verbose=True, plugin_kwargs=None):
     return conv_result
 
 
-def save_result(result_path: str, content: str) -> NoReturn:
+def save_result(result_path: str, content: str) -> None:
     with open(result_path, "w") as f:
         f.write(content)
 

eido/conversion_plugins.py

@@ -1,4 +1,4 @@
-""" built-in PEP filters """
+"""built-in PEP filters"""
 
 from typing import Dict
 from .output_formatters import MultilineOutputFormatter

eido/exceptions.py

@@ -1,4 +1,4 @@
-""" Exceptions for specific eido issues. """
+"""Exceptions for specific eido issues."""
 
 from abc import ABCMeta
 

eido/validation.py

@@ -1,5 +1,5 @@
 import os
-from typing import NoReturn, Mapping, Union
+from typing import Mapping, Union
 from copy import deepcopy as dpcpy
 from logging import getLogger
 
@@ -60,15 +60,15 @@ def _validate_object(obj: Mapping, schema: Union[str, dict], sample_name_colname
         _LOGGER.debug("Validation was successful...")
 
 
-def validate_project(project: peppy.Project, schema: Union[str, dict]) -> NoReturn:
+def validate_project(project: peppy.Project, schema: Union[str, dict]) -> None:
     """
     Validate a project object against a schema
 
     :param peppy.Project project: a project object to validate
     :param str | dict schema: schema dict to validate against or a path to one
     from the error. Useful when used ith large projects
 
-    :return: NoReturn
+    :return: None
     :raises EidoValidationError: if validation is unsuccessful
     """
     sample_name_colname = project.sample_name_colname
@@ -100,7 +100,7 @@ def _validate_sample_object(sample: peppy.Sample, schemas):
 
 def validate_sample(
     project: peppy.Project, sample_name: Union[str, int], schema: Union[str, dict]
-) -> NoReturn:
+) -> None:
     """
     Validate the selected sample object against a schema
 
@@ -123,7 +123,7 @@ def validate_sample(
 
 def validate_config(
     project: Union[peppy.Project, dict], schema: Union[str, dict]
-) -> NoReturn:
+) -> None:
     """
     Validate the config part of the Project object against a schema
 

requirements/requirements-all.txt

@@ -1,6 +1,6 @@
 importlib-metadata; python_version < '3.10'
 jsonschema>=3.0.1
 logmuse>=0.2.5
-pandas
+pandas<3.0.0
 peppy>=0.40.7
 ubiquerg>=0.5.2