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Updated wheels and Dockerfile build #1

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Updated wheels and Dockerfile build #1

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a99f515
initial state given wheels from dr. chang
anenbergb Nov 10, 2023
8ed4245
rebuild wheels using jarvis-core/scripts/build_wheels.sh
anenbergb Nov 11, 2023
48a11d5
updated gpu-full Dockerfile and environment.yml
anenbergb Nov 17, 2023
edcdd0b
updated environment.yml files
anenbergb Dec 22, 2023
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14 changes: 9 additions & 5 deletions docker/cpu-full/Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,17 +1,20 @@
FROM nvidia/cuda:10.1-cudnn7-runtime-ubuntu18.04
FROM nvidia/cuda:11.2.2-cudnn8-runtime-ubuntu20.04
MAINTAINER Peter Chang <pchang077@gmail.com>

# --- Copy files
COPY environment.yml .tmux.conf .zshrc vim/.vimrc /root/
COPY wheels /root/wheels
COPY vim/colors /root/.vim/colors

ENV DEBIAN_FRONTEND=noninteractive

# --- System packages
RUN apt-get update && apt-get install -y wget curl bzip2 vim silversearcher-ag tmux zsh git zip unzip build-essential && \
apt-get install -y net-tools iputils-ping netcat && \
RUN apt-get update && apt-get install -y wget curl bzip2 vim silversearcher-ag tmux zsh git zip unzip build-essential sudo && \
apt-get install -y net-tools iputils-ping netcat openssh-server rsync && \
apt-get install -y default-jre && \
apt-get install -y ranger caca-utils highlight atool w3m poppler-utils mediainfo && \
apt-get install -y ranger caca-utils highlight atool w3m poppler-utils lm-sensors && \
apt-get install -y python3-openslide && \
curl https://rclone.org/install.sh | bash && \

# --- dcm4che
wget -O dcm4che.zip https://www.dropbox.com/s/zl7adkprqeebvnh/dcm4che.zip?dl=1 && \
Expand Down Expand Up @@ -53,6 +56,7 @@ ENV TERM=xterm-256color
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8
ENV XDG_RUNTIME_DIR=/tmp/runtime-root
ENV XDG_RUNTIME_DIR=/tmp
ENV QT_XKB_CONFIG_ROOT=/usr/share/X11/xkb
ENV DCM4CHE_HOME=/usr/local/dcm4che
ENV DEBIAN_FRONTEND=
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