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release numpy<2 pin; upgrade networkit#115

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OleinikovasV wants to merge 13 commits intomainfrom
use_numpy2
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release numpy<2 pin; upgrade networkit#115
OleinikovasV wants to merge 13 commits intomainfrom
use_numpy2

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@OleinikovasV OleinikovasV commented Feb 18, 2026

Relieving the pains of this issue #111 !

Undoing the damage of PR #98 that pinned numpy<2 due to issues with networkit=11.0.0. This has since been remedied.

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FileStatementsMissingCoverageCoverage
(new stmts)
Lines missing
  src/plinder
  __init__.py
  src/plinder/core/index
  system.py
  src/plinder/core/structure
  smallmols_similarity.py
  structure.py
  src/plinder/core/utils
  cpl.py
  src/plinder/data
  databases.py
  final_structure_qc.py
  splits.py
  src/plinder/data/pipeline
  utils.py
  src/plinder/data/utils/annotations
  get_similarity_scores.py
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LGTM!

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