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prody / ProDy Public

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Fix StopIteration in alignChains with Biopython > 1.79#2221

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Copilot wants to merge 4 commits intomainprody/ProDy:mainfrom

copilot/fix-alignchains-biopython-errorprody/ProDy:copilot/fix-alignchains-biopython-errorCopy head branch name to clipboard

Conversation Commits4 (4)Checks Files changed

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Fix StopIteration in alignChains with Biopython > 1.79#2221
Copilot wants to merge 4 commits intomainfrom
copilot/fix-alignchains-biopython-error

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Commits on Feb 13, 2026

Initial plan
Copilot
committed
Fix StopIteration error in getAlignedMapping for Biopython > 1.79

Copilot
and
AnthonyBogetti
committed
Add logging and fix length mismatch in StopIteration handling

Copilot
and
AnthonyBogetti
committed
Use LOGGER.warning instead of deprecated LOGGER.warn

Copilot
and
AnthonyBogetti
committed

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