Skip to content

Pull requests: ratschlab/metagraph

New pull request New
18 Open 483 Closed
18 Open 483 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

index node ranges even when building inplace (load the graph with mmap)
#590 opened Jan 23, 2026 by karasikov Loading…
refactoring and optimizations in annotation queries
#582 opened Jan 10, 2026 by karasikov Loading…
Server queries in multi-graph regime with full loading to RAM
#569 opened Nov 21, 2025 by karasikov Loading…
Added support for indexing sequence IDs as counts
#560 opened Nov 4, 2025 by karasikov Loading…
Parallel Multi-BRWT query with one traversal
#559 opened Nov 3, 2025 by karasikov Loading…
5
Batch aggregation (two-level batching)
#522 opened May 16, 2025 by karasikov Loading…
5
use sparse bit vectors for rainbow matrices
#518 opened May 12, 2025 by hmusta Loading…
Port row_diff_traverse from DBGSuccinct
#512 opened Mar 13, 2025 by hmusta Loading…
Option to annotate a representative node from each monochromatic contig
#500 opened Oct 2, 2024 by hmusta Loading…
1
Count-based differential assembly
#487 opened Jun 11, 2024 by hmusta Loading…
Less stringent alignment and seed filtering
#453 opened Jun 5, 2023 by hmusta • Draft
5 tasks done
2
Support outputting alignments in GAF format
#384 opened Feb 7, 2022 by hmusta • Draft
4
implement the taxonomic classification with queries on the annotation matrix
#347 opened Aug 2, 2021 by heracle Loading…
11
support for multiple successors at forks
#329 opened Jun 16, 2021 by karasikov Loading…
8
mark rd successors only in forks
#308 opened Apr 2, 2021 by karasikov Loading…
Alignment and query cleanups
#271 opened Jan 19, 2021 by karasikov • Draft
Lower RAM implementation of slice_columns for BRWT
#226 opened Oct 26, 2020 by hmusta • Draft
10
Add checkpointing to metagraph build
#197 opened Sep 8, 2020 by danieldanciu • Draft
46
ProTip! Updated in the last three days: updated:>2026-01-20.