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Accidental bug in phenotype parser #33

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Merged
rjbohlender merged 1 commit into from
Sep 30, 2025
Merged

Accidental bug in phenotype parser #33

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2 changes: 1 addition & 1 deletion IBDReduce/ibdreduce_v3.py
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Original file line number Diff line number Diff line change
Expand Up @@ -182,8 +182,8 @@ def parse_pheno(ifile: str, phenotype: Optional[str] = None) -> Tuple[int, int]:
phenotype_indx = header_list.index(phenotype)
continue
else: # If no phenotype string then we skip the header
phenotype_indx = 1 # If no phenotype name is passed then we are going to treat this like a 2 column file where the first column are the ids and the second column is the phenotype status
if i == 0:
phenotype_indx = 1 # If no phenotype name is passed then we are going to treat this like a 2 column file where the first column are the ids and the second column is the phenotype status
continue

l = l.strip().split()
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