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Add tRNA structure plotting vignette#17

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jayhesselberth merged 3 commits intodevelfrom
structure-vignette
Feb 23, 2026
Merged

Add tRNA structure plotting vignette#17
jayhesselberth merged 3 commits intodevelfrom
structure-vignette

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Summary

  • New pkgdown article (vignettes/articles/structure.Rmd) that systematically covers every parameter and use case for plot_tRNA_structure() and related functions
  • Sections cover: basic structures, position markers, modification highlights, custom palettes, outline circles, text colors, combined annotations, linkage arcs, long variable arm tRNAs, identity elements, and output formats
  • Adds articles section to _pkgdown.yml indexing both the new structure article and the existing rewiring article

Test plan

  • pkgdown::check_pkgdown() passes with no problems
  • rmarkdown::render() succeeds for the new vignette (all 70 chunks)
  • Verify rendered HTML looks correct on pkgdown site

🤖 Generated with Claude Code

jayhesselberth and others added 2 commits February 23, 2026 10:52
New pkgdown article walking through every customization option for
plot_tRNA_structure() and related functions: modifications, outlines,
text colors, linkage arcs, identity elements, and output formats.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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github-actions bot commented Feb 23, 2026

Add structure vignette to navbar dropdown menu format adopted in devel.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
@jayhesselberth jayhesselberth merged commit 32e3c8a into devel Feb 23, 2026
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