Add sprinzl_coords parameter to plot_tRNA_structure()#21
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jayhesselberth wants to merge 2 commits intodevelfrom
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Add sprinzl_coords parameter to plot_tRNA_structure()#21jayhesselberth wants to merge 2 commits intodevelfrom
jayhesselberth wants to merge 2 commits intodevelfrom
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When `sprinzl_coords` is provided, position columns in `modifications`, `outlines`, `text_colors`, and `linkages` are interpreted as Sprinzl labels and converted to 1-based sequence positions automatically. The tRNA is resolved in the Sprinzl table via `trna_id` or auto-matched from the `trna` argument. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Use plot_tRNA_structure() with linkage arcs to show significant rewiring for tRNA-Glu-TTC, replacing the chord diagram visualization. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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Summary
plot_tRNA_structure()gainssprinzl_coordsandtrna_idparameters that automatically convert Sprinzl labels (e.g., anticodon positions 34-36) to 1-based sequence positions inmodifications,outlines,text_colors, andlinkagesconvert_sprinzl_positions()helper with warning on unmatched labels and row droppingnuc--prefixed and bare tRNA IDs in Sprinzl coordinate tablesCloses #20
Test plan
convert_sprinzl_positionsmaps labels to positions correctly🤖 Generated with Claude Code