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ERROR: Mixscale uses defunct "slot" object

Status: Open.

#19 In satijalab/Mixscale;

· ldrepano opened on Dec 14, 2025

Does Mixscale handle overlapping state distributions between perturbed and control cells?

Status: Open.

#17 In satijalab/Mixscale;

· caodudu opened on May 24, 2025

Run_wmvRegDE error

Status: Open.

#16 In satijalab/Mixscale;

· Abigail1l1l1l opened on May 20, 2025

CalcPerturbSig error: Warning: Layer counts isn't present in the assay object

Status: Open.

#15 In satijalab/Mixscale;

· nyuhic opened on Mar 13, 2025

Run_wmvRegDE logfc.threshold

Status: Open.

#14 In satijalab/Mixscale;

· Newloong-Wang opened on Mar 7, 2025

Should FindVariableFeatures(), ScaleData(), and RunPCA() be run on PRTB assay before RunMixscale()?

Status: Open.

#13 In satijalab/Mixscale;

· Newloong-Wang opened on Mar 5, 2025

Python version of Mixscale? Custom DEGs input question

Status: Open.

#12 In satijalab/Mixscale;

· reetm09 opened on Mar 5, 2025

Retrieving mixscale scores for NT cells

Status: Open.

#11 In satijalab/Mixscale;

· robinfallegger opened on Nov 27, 2024

Why does Mixscale use raw counts for differential expression analysis instead of corrected data?

Status: Open.

#10 In satijalab/Mixscale;

· caodudu opened on Oct 2, 2024

Expression Level of Target and Perturbation Scores Positively Correlated?

Status: Open.

#9 In satijalab/Mixscale;

· MujeebQadiri opened on Sep 3, 2024

Error in CalcPerturbSig

Status: Open.

#7 In satijalab/Mixscale;

· Saharprh opened on Apr 10, 2024

Edge case where all perturbations are NP

Status: Open.

#5 In satijalab/Mixscale;

· chriswzou opened on Feb 26, 2024