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Sherbrooke Connectivity Imaging Lab

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI.

Sherbrooke Connectivity Imaging Laboratory

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI acquisition, reconstruction, tractography, processing and visualization. The aim of the SCIL is to better understand structural connectivity, develop novel tractography algorithms, validate them and use them for human brain mapping and connectomics applications.

Useful links:

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  1. scilpy scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    Python 93 74

  2. tractoflow tractoflow Public

    TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

    Nextflow 61 26

  3. scil-documentation scil-documentation Public

    Documentation for the SCIL

    Python 4 20

Repositories

Showing 10 of 61 repositories
  • sf-tractomics-documentation Public

    sf-tractomics documentation

    scilus/sf-tractomics-documentation’s past year of commit activity
    MDX 0 2 0 0 Updated Jan 13, 2026
  • trigeminal Public
    scilus/trigeminal’s past year of commit activity
    Shell 0 3 0 1 Updated Jan 13, 2026
  • scilus_website Public

    SCIL website

    scilus/scilus_website’s past year of commit activity
    HTML 0 MIT 6 0 0 Updated Jan 13, 2026
  • sf-pediatric Public

    sf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.

    scilus/sf-pediatric’s past year of commit activity
    Nextflow 5 MIT 1 3 1 Updated Jan 12, 2026
  • scilus/sf-pediatric-documentation’s past year of commit activity
    MDX 0 1 0 1 Updated Jan 12, 2026
  • sf-tractomics Public

    Diffusion MRI Pipeline for human brain

    scilus/sf-tractomics’s past year of commit activity
    Nextflow 5 MIT 6 9 6 Updated Jan 9, 2026
  • nf-mouse Public

    Diffusion MRI Pipeline for Mouse

    scilus/nf-mouse’s past year of commit activity
    Nextflow 1 MIT 1 1 2 Updated Jan 9, 2026
  • scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    scilus/scilpy’s past year of commit activity
    Python 93 74 37 13 Updated Jan 8, 2026
  • neurogister Public
    scilus/neurogister’s past year of commit activity
    Python 2 1 0 1 Updated Dec 13, 2025
  • containers-scilus Public

    Files needed to build a container to run all scilus flows.

    scilus/containers-scilus’s past year of commit activity
    Dockerfile 4 5 4 1 Updated Dec 10, 2025